Gene detail

Detailed information of Conbi16733 in Conchocele bisecta Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Conbi16733	NUCLEAR PORE COMPLEX PROTEIN NUP	LG7	95308420	95403404	+

Gene Structure

More details in Jbrowse Sequence

CDS

Conbi16733

GATTTTCAGTTTCGCCAGTTGGTCAAGATCAGAGTTTCCCCGAGCCCGACCAACTTACCCACAGCCAGAGTGCAGCTGATTGTTGCTTCCAAGTATGGCATTACATTCGTTGGCACCAGTTCCGGTTTCAAGGTGATACAGACTGAGGCTATTCGCAAGGCCGACGAGCTAGCTTCGGCAGACCGTCTACAGTTTATAGTGACCGACATTGCCACGTTGGCTGATGTGACCATCCCGGAGCCAGTTACGGGGCTCGCGCTCAGCTGCGATGACCTGACCTTGGCTGTGGCCATTAGACTCACTGACGTGTCGGTTGTACTGTTATATGATGTGAGGAGCATAACTGCGCAGATGGTGCCGTTCCTGAGTGCACGTGTGAATGGCAGCCTAGGGTCCGAGCTGCTGGACATTGCGTGGAACCCGGTCACTCCGAACTTGCTGGTCAGCTGCCTGTCCGACGGTCAACTCGACATGTTTGAGATCACCGACAAATTTGGTGTAAAGGCATCCCTGAAGGGAGCAGGTGCTATGTGTGTCTGTTGGAGCCCCAAGGGTAAGCAGCTTGTCGTGGGAAAACAGGACGGCTCACTGATGCAATACGACCCTGAACTTAAGGAGAAGAGGAAATGGGACAGCCCCGCGGTTCTCGGCGAAGACCCATATCAAGCGCTGGATATCATCTGGCTATCGACGTACACGTTTATCGTCTCGTATATCGGCCACGGAGCGGACTGCAGTGACCAGCCCCATCTGATTCTCATCAACGGCAGCAAGGACCAGCCACCGACATACTCCAACTATGAAGACATCTGTTTTGGTACAGGAGAGGACCGGCAGAGAAAGTACAGCTTCAATTTTGTCACAAAATGGGACATGGTGCTGGCTGGGTCGAGCAATGCCTCGGAGCTCGGAGTCATCGGGAAACATCTGGATGACAAGCAATCTTGGGAGCACTGGAACCTAGACGACGCGGCGAGGGCAGAGTGCCCCCTGACGGACGACTACGTTGACACCTACCCCATGGGCATTGCCGTAGACTACACATCACAGACACCCGTAGCTCTCGGTGACAACGTGACGCGGCCGCCGTGTCCGATGGTGATGCTGCTGTCCACAGAGGGTGTCATCATTCCATACCACATGATGTACTCGCACAAACAGACACCGGTCATCACGGTCGTAGCTGACCGACTGCCGATTACGGGGACTCGTCAGCCTCCTGCTGGTCAGTCGTCACGACCGACAGGGGTGTTTACCGCAAGTGGCACCGGCCAATCACAGCCCAAGAATTTATTTGGTGCAGGACAGACAGCGCCTAGCAAAATGCAACCAAAGAATTTATTTGGTGTTGGAGAGACGTCCACCGCAGGTAGCCAATCACAACCAGCCAATTTACTTGGTGCTGGACAGACAACAGCCGGCCAATCGCAGCCCACAAATTTATTTGCTGCACCACAGACATCTGCCCCAACTAGCCAATCACAGCCAACAAATATATTTGGTGAAGGACAGACAACAGCCAGCCAATCACAACCAAAAAATTTGTTTGCTGCAGCACAGGCTTCTGCTCCGGCCAGCCAATCGGAGGCGAAGACAGCATTTGGTGCCGGATTAGGATCAAATGCCTTTTCATTTGCTGCACCTACTGCTTCTAGTGCAAATTCTGCCCAGATTTCCAGCAGTACGTCTGCTGCTGCCTTCAATTACTCCGCATTGCAAAGTGCAACAAACAGCCCGTTCTCATTCACAACACAGGGCTCAGAGACAGGTACATTTAGTTCCACTACAGCTTTTGGCTCATCCCTCGGTGCCCCAGCTGTGGCCCTTGATGGCCCCTCCCGGAGCACATCAACTACGTCTGCTGCCAGTTTTGGCGACGGCAAAGGCCCTGCCCCTTCGTACGGGGCACTGGCGTCCACGATAACAGTTGCCAAGACGAGCATTCCGGCCACAGTGCCTCCGTCCCAGCCAGGTTTTGGGACCGTAAGCTCGTCTGCAGCCGGAGTGGGTGTGCAGAAACGTGGGGCACCGTCATCCGCCGGCACCCAGCTCGAAAGGTCGTCTGCTGAAGTAGCAACAAGAGGTCAAAGTGCAGGGTTCGGCATGAGGCCTATCGCCACGGCAATGCCAACGTCTGCTGCGGGCCAACCAAAACCTGCAGCAGTCAGCAAGCCGCTGGCCCCTCGGTCGCCCACCCGTAAGAGCCCCGGGCCTCGCCCACCCCAGTACGCAGCCCCATCCTCACACGAGGCAGCAGGGGTGGCGGTGGACACACGAGAGTTGATCAGCGCCACCGTCGACCACTCCTTCTCCAAGAGTATACTGGAAGAGATGCAGCACTTTGAGAAGGAGTTGCGTGACTTGAAGTCGCGTGCGTCCAACAGTGACGTGTCCGTGGGGAGTCGAGACGAGACCCGTGTTCTACGACAACAGACGGAACAGCTCGACGTCTTCTGTACGGAGATCAAGAAAACTCTTAAGGAGCAGAGTAAGGAAGTCCAGGAACAGAGCACCCTGTGTCTGGACATGTTCTCGATGGCCGAAGAGTGTCGCTTACGGGAACAGATGAACTCCGACGACAAATATTCCCACCTACTCAAGTCGCGGGCCCTCGATCCCGGCAGTGCCGATAGGCTGCAATGTCTACAGCTACAGTGCCAGGTGCTGCACCAGGGGCTCGGAGACGTGGATCTGATCCTCGACACAGAGTGGGATGAATACCAGCAGCGCAAGAAGAACAAAACCAACAGGTTACAAGCTCCAACGAATGACGCAGTGTACCGAGTGGTGAAGAGCAATAACAACCTGATCCTGGCCCAACGTAAAAGCGTCACGCAGCTCGAGAGACGACTAAAGCAGCTCAAGTTGTACAACAAAACGTCGGCCTGGCAGAATAGCACACTCAGGTCCAGCCGTGGCAATGACTCCACCGAACTGTCGAGCCTAGCCGACTCCCTGCTCAACCCCCCGCCCAGCCCCGTGAAGGCAGCGAGTGTATCGTCGGGCGGCAGTAGCGTTAGCTCCGACAGGCTGGCTCAGCTACGCGAACATCTATACAGGCGCCCCGTGCCCATCATCAAGTCAACTAAACCCGAGAACCTGTCCCTGTCCAAGATCGCCATGCCGGACGACCATCTACAACAGTTGGTGTGCAGGGAGAAGTCACCAAAAAGGTCGCCACAAAGGTCGCCTATGCCTTCCACATCTGGTACGGGTTTACCCGGGGAGTTTGTCGGAATGAGGCGGCGATCAACACTTACGCAACCCCCGCCTCCCAAGGCAACCACACAGCCGAGTAGACCAGTTCCCACCGCAGCAGCTCCCCGTAAACCGGCTCCCGCGCCGGTAGCATCAACCGGTTCCCAGCTCAGCAACAGGCCAGTAATGGGAACGAACGTGATGATGGGAACCAGCAAGTTGTCTGAGTTTGGGGCGAATTTGCCGAATTTAAACACTGTCGCCGGCCTACAGTTGCAAGGCAACGCGATGTTTAATCTGAACCAGATGGCAAACATGTCGACCACACAGGGGCAGGCGTTGCGAGTGCGAGAGATCAACGGGATCCAACTGGAGGACATCACACCGAGTCAGTCGGAGGGCGATACCTTAGACGAAGATGACGAGTACGATGACGACGACGACAGCGAGAGTAATGGCGAGGGCTTTGGGGACGAATACAACATGCTCGCGCCCAACATACAAGGCATCGGCATTACCTCGACCCCCGTGCCGACTGGTTCCAGGCCTGCAGGGGCCAGTACTGCTACACCAGTCAGCAGGCAGCTGTTCGGAACGGGAACCGATCCATCACAGTCAGCGGGAAGCTTTAACTTTGGAGCCGGAGACACCCCGGCGACCTTCACCTTTGGTACAGCCAACAGCACCCTGCCGAAGAAAACGACCGACAAGCCTGACACGTCTGCTGCAAAGCCGTTCAATTTCACTCCTGCCGCCCCCACAACAACCACCTCCTCCGCCCCGGGATTTAATTTCTCATTCTCCACGGGCGCTCCATCATTTGGGGTGGCAACGGAGCCAGGAGCAAAACAAGCAGACGAGATGCCAGACGTGATGCCAGGGAGTACGTCTGCTCAGGAAAAGGGGGAGGAAATTGGAACAGCCACTGCTGGATTCACATTTGGCTCTTCTAGCGGTGTACAGTCTGGAGCGGGCGTGTTCAGCCAGACGTTACAGCCGGGGACGTCCGCACCGGGAGGTTCGCCGACGTTAAAGACCTCCAAGTCTGGTTCCCTGCTCGAGCTGGTCGCGGCAGCTGACAACGAGGAGCGGACCGGGATCCGTCAGGGAGACACTCTTCACGATGGAGCCACCTCCGCTGCATCTGGGATCAAGCCGCCCTCCACTGCTAGTGAGGTGACACCGGTACTCAGCAGTCTACTTACAATCCCAGACTCTCCAACCCCTGCTAGCGAACAGACAGGGTCTGGTCCCAGTTCATTGGGCAGTGACTCAAGTCAGGTGACAGGAAGTTCTGCTACTGTTGACCTATCGGCTGTCACGACAAGTACCATGCCCACAGCAGGGATGTTCGGCCAATCAGCTTTAAGCTCTGGTGTGACTCCGCCCACAGCAGGACAGTTTGGCCAATCACAAGCTGGGTCAACGTCTTCAGAAGGATTATTTGGACAAAAATCAACAAGTAGCAGTTCTGGTAACCTCTTTGGTGGAGCCTCTACCACGGCCAGCACGAGTCTGTTTGGCACAGCGACTGCATCCAGTACTGGTGCTCTGTTTGGTGGACCGTCACCAGTGACCGGCGCATTATTTGGTCAGGCCTCTGCTACCACAACCTCGCTGACAACATCGACTGGAACAGATGCTTCTGCGGGACAAATATCGGCTCCAACAGCGTCTACTACATCGACCTCAAGTGGATTATTCGGCCAAACCTCAGTGAGCTCAACTGGTGGGCTGTTTGGGCAGGCGTCCACTCCAACTACCAGTTCTGGAGGAGCACTCTTTGGGCAGGCTGCACCTACAACATCCACTAGTTTGTTTGGTCAAGCCACGACCACAACTACAGAATCTACGGGGTTGTTTGGACAAGCATCGACTAGCACTACCACTGCATCTACTGCGTTATTTGGACAGTCTTCTGCGACCACTGCGTCAGCTGGTTTATTCGGACAGTCCTCTTCTGCTACTTCTGCATCATCTGACATATTTGGACAGTCTGCTACGACCACTGCTGCACCTACAACTTTATTTGGGCAATCTTCTACCACTACTGATTTGACTACGTGGTCATTCGGACAATCTACGGCCACCACGACTGCTACCACTGGCTTTGGCTTGTTCAGCCAGCCAGCTACGACAGCCCCATCCACTGGCTTGTTCAGCCAGCCAGCTACGACAGCCCCATCCACTGGCTTGTTCAGCCAGCCAGCTACGACAGCCCCATCCACTGGCTTGTTCAGCCAGCCAGCTACGACAGCCCCATCCACTGGCTTGTTCAGCCAGCCAGCTACGACAGCCACATCCACTGGCTTGTTCAGCCAGCCAGCTACGACAGCCCCTGGCTTGTTTGGATCTTCTACGGCTGGATCAGGATTTGGTCAACCAGCATTCGGACAGTCGGCGCAGTCTACAGGATTTGGCCAACCTGCGTTCGGACAGACGGCGGGATTTTCATCTCCCAGCTCTAGCAGTGGATCTGGACCTGCATTCGACCAGAAGACCGACTCAGGCACGGGCGAGGGTGGGGGATCGTTCTTCAGCGGCCTGGGGGGCAAACCGAGCGAGGAGAAAGCCAACACGAATGTCTTCGGTAGTGGACAGCTGTTTGGGTCGACCAATCAGACAGCTGGGCTGTTTGGTGGTGAGACGGCTAAGACCTTCGGCGGTTCGGCCCCCGGTGGTGAGACCGGTGGGCCATTCTCCGGTGGTGGGGGCGGGGGCGGGGGATTTGGCTCCACGGGGGCAGTGGGCGTAGCAGCCACTGGATTTGGGGCGACACAGCAGCCCGCTGCAGGTGCCTTTGGGAACCCACCAGCGTTTGGTGGATCCCCAGCATTTGGGGCGGCCCCCAAGTTTGGGTCTGGGGCGTCGTTCGGCAGTCCACCATCGTACGGCAGTGGGGGAACATTCGGCTCGGCGGCCACATTCGGTAGCTCCATGACCGGAGCGAGCACGTTCGGCACGGACGCGACTAGTTCTGCAAACACTGCAGGATTCGCTGG

Transcript

Conbi16733

Protein

Conbi16733

DFQFRQLVKIRVSPSPTNLPTARVQLIVASKYGITFVGTSSGFKVIQTEAIRKADELASADRLQFIVTDIATLADVTIPEPVTGLALSCDDLTLAVAIRLTDVSVVLLYDVRSITAQMVPFLSARVNGSLGSELLDIAWNPVTPNLLVSCLSDGQLDMFEITDKFGVKASLKGAGAMCVCWSPKGKQLVVGKQDGSLMQYDPELKEKRKWDSPAVLGEDPYQALDIIWLSTYTFIVSYIGHGADCSDQPHLILINGSKDQPPTYSNYEDICFGTGEDRQRKYSFNFVTKWDMVLAGSSNASELGVIGKHLDDKQSWEHWNLDDAARAECPLTDDYVDTYPMGIAVDYTSQTPVALGDNVTRPPCPMVMLLSTEGVIIPYHMMYSHKQTPVITVVADRLPITGTRQPPAGQSSRPTGVFTASGTGQSQPKNLFGAGQTAPSKMQPKNLFGVGETSTAGSQSQPANLLGAGQTTAGQSQPTNLFAAPQTSAPTSQSQPTNIFGEGQTTASQSQPKNLFAAAQASAPASQSEAKTAFGAGLGSNAFSFAAPTASSANSAQISSSTSAAAFNYSALQSATNSPFSFTTQGSETGTFSSTTAFGSSLGAPAVALDGPSRSTSTTSAASFGDGKGPAPSYGALASTITVAKTSIPATVPPSQPGFGTVSSSAAGVGVQKRGAPSSAGTQLERSSAEVATRGQSAGFGMRPIATAMPTSAAGQPKPAAVSKPLAPRSPTRKSPGPRPPQYAAPSSHEAAGVAVDTRELISATVDHSFSKSILEEMQHFEKELRDLKSRASNSDVSVGSRDETRVLRQQTEQLDVFCTEIKKTLKEQSKEVQEQSTLCLDMFSMAEECRLREQMNSDDKYSHLLKSRALDPGSADRLQCLQLQCQVLHQGLGDVDLILDTEWDEYQQRKKNKTNRLQAPTNDAVYRVVKSNNNLILAQRKSVTQLERRLKQLKLYNKTSAWQNSTLRSSRGNDSTELSSLADSLLNPPPSPVKAASVSSGGSSVSSDRLAQLREHLYRRPVPIIKSTKPENLSLSKIAMPDDHLQQLVCREKSPKRSPQRSPMPSTSGTGLPGEFVGMRRRSTLTQPPPPKATTQPSRPVPTAAAPRKPAPAPVASTGSQLSNRPVMGTNVMMGTSKLSEFGANLPNLNTVAGLQLQGNAMFNLNQMANMSTTQGQALRVREINGIQLEDITPSQSEGDTLDEDDEYDDDDDSESNGEGFGDEYNMLAPNIQGIGITSTPVPTGSRPAGASTATPVSRQLFGTGTDPSQSAGSFNFGAGDTPATFTFGTANSTLPKKTTDKPDTSAAKPFNFTPAAPTTTTSSAPGFNFSFSTGAPSFGVATEPGAKQADEMPDVMPGSTSAQEKGEEIGTATAGFTFGSSSGVQSGAGVFSQTLQPGTSAPGGSPTLKTSKSGSLLELVAAADNEERTGIRQGDTLHDGATSAASGIKPPSTASEVTPVLSSLLTIPDSPTPASEQTGSGPSSLGSDSSQVTGSSATVDLSAVTTSTMPTAGMFGQSALSSGVTPPTAGQFGQSQAGSTSSEGLFGQKSTSSSSGNLFGGASTTASTSLFGTATASSTGALFGGPSPVTGALFGQASATTTSLTTSTGTDASAGQISAPTASTTSTSSGLFGQTSVSSTGGLFGQASTPTTSSGGALFGQAAPTTSTSLFGQATTTTTESTGLFGQASTSTTTASTALFGQSSATTASAGLFGQSSSATSASSDIFGQSATTTAAPTTLFGQSSTTTDLTTWSFGQSTATTTATTGFGLFSQPATTAPSTGLFSQPATTAPSTGLFSQPATTAPSTGLFSQPATTAPSTGLFSQPATTATSTGLFSQPATTAPGLFGSSTAGSGFGQPAFGQSAQSTGFGQPAFGQTAGFSSPSSSSGSGPAFDQKTDSGTGEGGGSFFSGLGGKPSEEKANTNVFGSGQLFGSTNQTAGLFGGETAKTFGGSAPGGETGGPFSGGGGGGGGFGSTGAVGVAATGFGATQQPAAGAFGNPPAFGGSPAFGAAPKFGSGASFGSPPSYGSGGTFGSAATFGSSMTGASTFGTDATSSANTAGFA

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13634	Nucleoporin_FG	Nucleoporin FG repeat region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680	Repeat	WD40 repeat	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR025574	Repeat	Nucleoporin FG repeat	Interproscan
IPR026054	Family	Nuclear pore complex protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23193	NUCLEAR PORE COMPLEX PROTEIN NUP	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005643	Cellular Component	nuclear pore	Interproscan
GO:0006405	Biological Process	RNA export from nucleus	Interproscan
GO:0006606	Biological Process	protein import into nucleus	Interproscan
GO:0008139	Molecular Function	nuclear localization sequence binding	Interproscan
GO:0017056	Molecular Function	structural constituent of nuclear pore	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-