Gene detail

Detailed information of Conbi12259 in Conchocele bisecta Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Conbi12259	UBIQUITIN CONJUGATING ENZYME 7 INTERACTING PROTEIN-RELATED	LG1	42140885	42204888	-

Gene Structure

More details in Jbrowse Sequence

CDS

Conbi12259

ATCTGTCTGAACGTCACTCTGAATCAGCAACAGAAGGATCTTCAATATTCAATCACGGATACATCTTGGCACGAGTGTAAACAGAAAACTGGCGGCAAGTGGCGTAAATTTCTTCTCAAGTTTGACGCCAGTGACGAGGAGTTTACAACCTTCCAAACGAAGCTCATCAACATTTTGTCGTTAGTTGAGACAGGCAAAACAGGAAAGTGTACCTATATGCTGGTAGCAGTACAAGTTCCAAGTAGCGACGTCATTCCCAAACCAAATGTTCTCCGAAAATCTATATCGGACTCGTCAGTAGCTTTAGACACTAGTAACCGGGGCTCGGCAGTTAGTGACCGAAGTAGTCCAACAGATCCATTGGTCAACAGGAATAGTGACATACCTCTCCAATCACTAAGAGCCCCATTTGACCCCGCTCCATACTTACCCATCACAGCAGAGCTCATCACGAATAATAGTGTAGAAACTACCAAATATCCGGATTATGAGAAGTTCCCACCGAGTAGCGACGTAGTTACCAAAGTGAATTTTCCATTATTTGATAGCTTACATATCCATCCAAGTGAACTGCCTAGGAAGCTAGATTCAATTCTGAACTCAGTTGACAGTGTGTTCCAAACTGATGCAAGTGGGTATTATGAGCCGATACATTCGGAATTCTTGCTAACAGACGATACATATGTGCAAATGGGAGCACGGAACAAGATGGATGCCAAGACTACCCCGAATGCCCAGCTGCAGGAGGAAGTGGCTACAAAGACAGCCAAGTTGCTGCAGACGGCCATTAATGATGGCGATCAGAACCATGCGAAGGAGTATGCAGCTAAATTGGCTGCAGAAAATGTTCTGGTCACAATTAACATCCGACCAAAGGAGACACCAGAGAAAGACCAAGAATTTAATTTGAAGGTGTATATAGAAGACAAAGAGGCATCTGGTGGGAATATCACACTCAAGGTCAAATTCACAGATACAATCAGAGATCTCAAGAACAAGATGTTGATGAAGCACATGTTTCCGGTGGAGGTACAGTCGTGGATCATCGGCAAGCGAATCCCGCCGGACACGGACACTCTCGCTCAGTGTCGGATCAAGTCGACCGGCTTCTCCGCCTTCCTGTACCTCACGTCCGCCCGATCCGCCGGCCTCAATCGCGAGGAGTTTCAGGAGCGGTGGGCCAAGGCGACCGCGCCCACTGATGTGAAGCCAACAGAGTTACCCCCTCCCCCCACCCCTGCGACTGCGGGCAGTTCGCCAGGCAGTTTGCCAGGCAGTCGTCATTCGCCTACACCCCCACCCTTAGCTCACAAACAGGAACCAACAGTAGAGCTACGCTCAAAGCCCACTCCGGCCCCTAAGCACACCTTTGCTGGCCACAAATTTCCGCCGCAACCGAGGACAAGAGAGACGTCTAACGAAATAAAGGATATGATGGGTCAGCTGCAGCAGGTACAACTCGCGGGGTCCGGGGACAGCAGTGTGTCATACGACGAAGCCCACACGGGGTGGGCGTGCACTGCATGTACGTATATCAACCAGCCAACGCGACCCGGGTGTGAGGTGTGCGCAAACCCACGCCCGGCCGAATACAAGGTGCCGGACGAATACGTTATCACTGAAAAGGAGAAACAGCGTCTGAAGCGTGAATCTTTGCTGGAAAAACAGGCACAGGCGGCGGAGGAGATCCGTGTAGCAGAGGAACAACGGCAGCGAAAGAAGAATTACGAGTTACTGCAGGACACAGACGCTCGTGACCTCATCCCAACCGCCGAACCTTTCACCTGCCCAATCTGCTTTGACATCATTACTGCTGCTGACGGAGTCATGCTCAGGGAATGTTTACACGTATTCTGTCGGAAATGCCTGAGTTACGCTGTGGAATACGCGGAGGATGCCGTGTTGCTGTGCCCGTATCAAGACGAAAGCTATACCTGTAATGGAACGCTACAGGACCGCGAAATAAAGGCACTTGTCACTGCGCAAATGTACGACCGTTACCTTGCCCGAAGCCTAAAGACTGCTGAAAGCCAAGCAGCCAATAGCTTCCACTGTAAGACGGCCGACTGTGCTGGCTGGTGCATCTACGAGGACCACGTCAACTTCTTCGTCTGTCCAGTCTGCCGAAAGGAGAACTGCCTGACGTGCAAGGCGATACACCAGGGCATGAACTGCATGCAGTATCAGGAGGACGTGAGGATCCGGTCACAGAATGACCGGGCGGCCGGACAGACACAGTCAATGATCCAGAAGATGTTGGATGATGGGGACGCCATGAATTGTCCACAGTGTCGGGTGATCGTGATGAAGAAGGAGGGCTGTGACTGGATACAGTGCTCGATTTGTAAGACGGAAATCTGCTGGGTCACCAAGGGTCCGAGATGGGGCGAACTG

Transcript

Conbi12259

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|ZnF\|NZF
Ubiquitin Family	E3\|E3 activity\|RBR

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00240	ubiquitin	Ubiquitin family	Domain	Interproscan
PF13445	zf-RING_UBOX	RING-type zinc-finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000626	Domain	Ubiquitin-like domain	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR001876	Domain	Zinc finger, RanBP2-type	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR027370	Domain	Zinc finger, RING-type, eukaryotic	Interproscan
IPR029071	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR036443	Homologous_superfamily	Zinc finger, RanBP2-type superfamily	Interproscan
IPR044066	Domain	TRIAD supradomain	Interproscan
IPR047558	Domain	Heme-oxidized IRP2 ubiquitin ligase 1, BRcat domain	Interproscan
IPR047559	Domain	Heme-oxidized IRP2 ubiquitin ligase 1, modified RING finger, HC subclass	Interproscan
IPR051628	Family	Linear Ubiquitination-Associated E3 Ligases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22770	UBIQUITIN CONJUGATING ENZYME 7 INTERACTING PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000151	Cellular Component	ubiquitin ligase complex	Interproscan
GO:0004842	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0043130	Molecular Function	ubiquitin binding	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0097039	Biological Process	protein linear polyubiquitination	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-