Gene detail

Detailed information of Conbi07169 in Conchocele bisecta Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Conbi07169	WD40 DOMAIN-CONTAINING PROTEIN MIO FAMILY MEMBER	LG17	39255858	39353400	-

Gene Structure

More details in Jbrowse Sequence

CDS

Conbi07169

CTTTGGACAGAACAGTGACAGTGACCTTGTAGGGAAGGAGTTTGCCCCGAAGCATCTGCGCCATTGTACATACCTACACTGGAACCCCGTCACCTGCAATCTCTTGGCTGAAGGGTTAGACAAACACCGCAATGACTGCTGTATTGCAATCTGGGACGTGAACTCGAAGCCGGGCTCCGACTCGCTGGGTCCCGAGCGACAGCGGTACAGCTCCGCCAACATGAGCGACAGCCTGGTGGTGAATAAACCGTATATTGAGATAGGACTTGGAGAGACTACGTCGTCCTTTGCCTGGTCCCACAAGGAACCTCGTATCTTCGTCACCGGCATCAATGGGAAATATTTGCGAATTTACGACCTCAGAGATGTAACAAAGCCGCACCTGATCGCGGGAACAAAGTTTGTCCATGGCCTGTGTACAGATCCTCAGCACGACACTCACGTTGCTTCATTCTCTGAGAGCCATGTCTCGATCTGGGATGTCAGAAGTTTCGATAAACCCCAGCTGGTGTTGCCGTGTGACCGGGCTATAATGAAGATTGACTGGTGTCCCACAAGAACGGGTTTCCTGGCGGTGCTGTGCCGTGACAGTTCTGTTGTGAAGCTGTACGACATTCGCCATTCCATTATCGGCACAGAGGAGCTGGAGCCTGTGATTATAGAACGCCACATCCAACCGACACGTCAACATGCTGTCGCCCATTTTGCCTGGCACCCGACGGACGAGAACCGACTACTGACGGTCACACCCACCGGCAACCTGCGGGACAACCTCATCTTTGAGAAATTGTCACTGAGCATGTCGCCATCGATGCATGTGACGTGGGCGACCGGGAAGAAGATTGTTGTGTCGGACTGGGTGTCGGACGTGGACATGGCCGCCAGGATCAGGATCCGGGGCCAGCGGGGCTACGGTCTACACGTGGACAAGCCGTGGAACAACGCGATTGTGGTGCGGGACGAGCCTGACCTCCATGACCTCTGGCATTGGATAGACTTATCAAAAGTGTTATCATCAAGAACTGACGACCAGGCGAGACAGAACAAACCACCGGCGCCGAAATTTATCGGTGTCCAAGGGATCCTGCGTCTAGAAGACCAGGAAAGAGTCAGTGACCTCAAGTCGTGTACGTGGCAGTACCCGGAGGGAGCGAAATCCAACAGCTCAGAGCGACGACTGTTGTATCAGTTTAAGAGTGAGGAGAGGACGCGGTCACTACAGCTGTGTGGATGGTGGTACGACACAAGTGACTCTCGGGAAACGCGGGATCCACTCAACCTCTTCTTGGATAGTTTGGTGGAGAAGAATGAGGAGTATGAGCGAGCGGCGGCCATCGCCATCTTCAACCTGAAGATAGGAAAGGCCGTTGACATACTTAGCTCTGTCATGGACGGAAGTCCCAGCCTAACAACGGTTGCCATGGCACTGTCAGGGTTTACAGAAGAACGGAATGCATTGTGGCGTAAAACTTGTGCGAGCCTACGTCAAAGTCTGCGAGATCCGTACCTACGAGCGATGTTTGCTTTCTTGGCCTGTGAGACGGATAACTATGAAGATGTATTGCAAGATGACCCCTGTATGGCGGTGAAAGATCGGGTTGCCTTTGCCTGCATGTACCTGAATAATGTACAGCTGCACACCTACCTGACAGAACTGACCAAGGAGTTGAAGAAGACGGGAAACCTCGATGGTATACTCCTTACTGGTTTGACGACAGAAGGTGTGGATTTGTTACAAACGTACGTTGATTTAACGGTTGACGTTCAGACAGCAGCGTTGGCAGCTGTTTACAGCTACCCGAATGAGATATCTAAGGATGAACGAGTGCGACATTGGATCGATAGCTACAGAGAACTGCTGGATAGATGGAAGCTTTGGCATCTACGGGCCAAGTTTGACATAATGCGCCACGCGGTGGACACGAGTGTGCGGGTGCCGTCGCAGGCGTTCGTCAGCTGTAACTTCTGTGGCAAGTCGGTGGCCTGTAACATGACGCTGGCCGCCCGGTCCAGACCCGTCATGCAGTCACTTCTGCCATCCACACATAAACCTAAGATAACGTGCTGCCCGGGGTGCAGGAAGCCCCTGCCCAGGTGTTCGCTGTGTCTGACCAACCTCGGCACGCCGGCCGGCTCCGCACTGTACCAGCAGAACGACAACAAAGCCGAGTTTGACAGCAAGCTGTCGTCGTTTGACCACTGGTTCACGTGGTGCCAGTCGTGTCGACATGGCGGCCACAAATCCCACATCCAACAGTGGTTCGCGGGCCACGCGGAGTGTCCCGTCACCGGCTGTATATGTCGCTGTATGTCACTAGAGTCTGCGAGTCAACTGGCCGCTGAGGTCTCGACCTTCAGAGATATTCAGGAAGTGAAGGGATCGTGA

Transcript

Conbi07169

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17034	zinc_ribbon_16	Zinc-ribbon like family	Family	Interproscan
PF21719	MIOS_a-sol	MIOS, alpha-solenoid	Repeat	Interproscan
PF21720	MIOS_WD40	MIOS, WD40 repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR031488	Domain	GATOR2 complex protein MIO, zinc-ribbon like domain	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR037593	Family	MIOS/Sea4	Interproscan
IPR049092	Domain	MIOS-like, alpha-solenoid domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16453	WD40 DOMAIN-CONTAINING PROTEIN MIO FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0034198	Biological Process	cellular response to amino acid starvation	Interproscan
GO:1904263	Biological Process	positive regulation of TORC1 signaling	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-