Gene detail

Detailed information of Clavulariidae_g13227 in Trachythela sp. YZ-2020 Gene info

Gene ID	Annotation	Contig	Start	End	Strand
Clavulariidae_g13227	RIBONUCLEASE	ctg000268	81699	83849	-

Gene Structure

More details in Jbrowse Sequence

CDS

Clavulariidae_g13227

ATGGTCGAAGTCGGCGCCGTGCAGCGCGACGGCAAGCGCGGTTATCTGCCGGGTCATGGCTTGCCGCCGGTCACGATTGTCGAGGTCGTATCGATCGACAGCGACGGAGAATTGCTGGCCCGCCCGGCCAATTGGAAGCAGACCTCCCCGCCGCCGTCGATCTACCTGTCACCCGGCACCCGGGGCACGCCGGCCCTCACCCAGGGCGACCGGGTCCTGGCCAGGCTCACCCCGAGCGACGACGGCAGCTACGAAGGCGAGCCGATCAGGGTCCTGGCGGCCGGCCCCAAGCTGGTGCTTGGCGTTTATCAGCAGGGTGAGCGTGGCGGACGGCTCCTGCCGACCGACCGGCGCGCAAGATCCGAATTCGTTCTGCACGCCAAGGACGCCAAGGACGCCCGTCCGGGAGAATTGGTCCTGGCCGAAGTCAAGCCGCGCCAGAGTCGCCTCGGGCTACGCGAAGTACGGGTCCAGGAGCGCCGCGGCGAGATCGGCGGGGTCGGAAACCTAAGCCTGATTGCCGCGCTCGAGCACGACCTTCCGATGGCGTTCTCCGCTGGAGCCCAGGCGGCGGCGAAGGCCGCCGGGCCGGCCGAACTGGGTGACCGCAGCGATCTGCGCAACATTCCGCTGGTCACCATCGATGGCGCGGACGCCCGGGATTTCGATGACGCGGTCTGGGCGGAACGGGACCCGGCGCCGGACAACCGCGGCGGTTGGCACGTGATCGTCGCGATCGCCGACGTGGCACACTACGTCCATCCCGGCAGCGCCCTCGACAAAGCCGCTTACGAGCGGGGCAATTCGGTCTATTTTCCCGATCGGGTCATTCCCATGCTGCCCGAAGCCCTCTCGAACGGCTGGTGCTCGCTGGTGCCCGGCGAAGATCGCCCCTGCCTGGCCGTTCACTTCAGGCTCGACCCTGCCGGCCAGTTGCTCGACCATCGCTTCGTGCGTGGTCTCATGCGCTCCGCCGCGAGGCTGACCTACGAACAACTGCAGGCGGCCCAAGACGGTCACCCGGATGCGGTGACCGCGCCCTTGCTCGACGAGGTGATCTCGCCGCTCTATGGCGCCTACAAAGCCTTGATTACCGCACGGGAGGCGCGCGGAACCCTGGATCTGGAGCTCCCCGAGCGCCAGATCGAGCTCGGTGAGGACGGCCAGGTAGTCGCCATCACACCGCGAGCGCGGCTCGACAGCCACCGCCTGATCGAGGAGATGATGATCACGGCGAACGTCGCCGCGGCCCAAGCGCTCGAAGCCCGCGCCGCGCCCTGCGTCTACCGGGTCCACGAGTCACCGGACCCGCAGAAGCTCGAGGCCTTGCGTGACATGCTCGATAGATTTGGGCTCCAACTGGCACGCGGGCAGGTGATCCGACCCGGTCTCTTCAAACAGATCCTCGAGCAGGTCAAAGGCGAGGTCGCCGCGCCGCTGGTCAACGTCCTGATCCTGCGGAGCCAGAGCCAAGCCGTCTATGCAACGGAGAATCATGGGCATTTTGGCCTCGCCCTGCCCCGCTATGCGCACTTCACTTCACCGATCCGACGCTATTCCGACCTGCTAGTGCACAGGTCGCTGATCAGCGCCTACCGGTTGGGCGAGGGCGGGCTGGCGGGCATCGAGCAGCTCGGCGGAGCGGCCGAACATATCTCGAGCACGGAGCGCCGGGCCCAGGCGGCAGAACGCGAATCGGACGATCGGTTCGTGGCGGCCTTCCTGCAGCATCGGACCGGGCAGGATTTTCCCGGGCGGATCTCGGGCGTCACCCGTTTCGGCCTCTTCGTCACACTGGATGATCTGGGTGCCGATGGCCTGGTGCCGGTCAGTACCTTGCCGAACGACCGCTACGATCATATCGCCGCAGAACACATCTTGGTCGGGCGTCGCTGGGGCCGCGTGTACCAGCTCGGGTCGAGGGTCACGGTACGTTTGACCGAAGCCAATCCGATCACCGGGGGCATGATCTTCGATCTGATCGGCACCGAAAGCGACCCGCGACAGGACAAGGGATCTCGAACCGGGAACAGGGCCGACGGCGGACGGCCCGGCCGTGCCACCAGCGCCGGGCACAAGCGAAAGCGCCGAGCCGCTGCCGGCCGGCCGGGAGGACAGAAGGCGCGACCTCCCAAGGGCAAACGGCGCTAA

Transcript

Clavulariidae_g13227

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00575	S1	S1 RNA binding domain	Domain	Interproscan
PF00773	RNB	RNB domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001900	Domain	Ribonuclease II/R	Interproscan
IPR003029	Domain	S1 domain	Interproscan
IPR004476	Family	Ribonuclease II/ribonuclease R	Interproscan
IPR011805	Family	Ribonuclease R	Interproscan
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR022966	Conserved_site	Ribonuclease II/R, conserved site	Interproscan
IPR050180	Family	RNR Ribonuclease	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23355	RIBONUCLEASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000175	Molecular Function	3'-5'-RNA exonuclease activity	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0004518	Molecular Function	nuclease activity	Interproscan
GO:0004540	Molecular Function	RNA nuclease activity	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0016070	Biological Process	RNA metabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-