Gene detail

Detailed information of Clavulariidae_g12555 in Trachythela sp. YZ-2020 Gene info

Gene ID	Annotation	Contig	Start	End	Strand
Clavulariidae_g12555	DNA-BINDING PROTEIN SATB FAMILY MEMBER	ctg000244	239076	241725	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Clavulariidae_g12555

ATGGGGAATATAGTTCAAGGGTTTTGGCTCGACGACAATTTTCGCAAGACGGGCTTGGAGTATTTGAAGGCAAAAGAGGAAAAAGAATCTCAAAACACGGATGGTGAAACTAGTACACCGTTGAAGAGTTTTGGTGGAATTGATCGCTGTATACTACGCGCTTATGGTAGGTCAGAATTTTTCTAGAATTGCTTGTTTTGCTATTTTTATTTCGCTTTATACACCAATAAGCTGCAATGCGCTCaactttgttatttttcttCGTCAATTGGACAGGGACTGTTGTCATTTGCTAAAACCATAATATTAAAAACTCACATCAGACAGGCAATTGGTACAAATTCCCATATATTTTTACTTGCCTGGACTTTTGCATGAGTTTTGGCAGAATATAGCATACATCTCCACCCTGGCTTACCAGAAACTTATGGCTTGCATAAAGCTTGCAACTGCCAAAGTGTTAAAGCATGGGTGGAGTGGCCAGTCGGGCTCAACGGTGGGCCCCCTGCTTGTGGGACCCCTTGAAATGGGCCTTGATGTTATGTATAAACGCTAGCATTTCCAAATTAATCGTATGTCCCTAAGCAGCATAAACCTTGTGGATCTCGCGCTGATGTGAGGGTCTCTGCGCTCTCTTCTTGTGTagtatttgttattttataaaaagcaTTGGGCTTCAGAAAAGGAATGACTCAAAACGTACCGCTTTAAAATCTAGGCAAGTATAGGCAAAGCACTACCAGTTATAGTTGTGTTGTTAAAAAGATAAGGTAAATCAATTAGGGGGTTCGGGCCCCCTTCTACCCCAGATTGCCTGGGCCCCTCTGAGGTAGCCAGTCTGCCCCTGTGTTAAAGGCATAAAATTCTTACTAATTCCAATATCCCTTCTAGTTGCTATCCGTATCATGCCAGTGTGGAAATGGCTTGAATTTAAAGATTTCATTGTGGACTTTGAAAACAAGAAAGATTGCTATACAGTTGGTGACGTGTTAGGCACCCTGTGCACCGGACTTCATAAACCAGTCTTAAGGATTGTACCAAAAAGCGAGTAAGTTGTGtgtttaatttgtaaatattctttaCTGCAATCATCATTATTGATCTATACTGATCATCCACTCTAGTGTAAATTAGCCAATTATCATCAACATTGttgttttaataatttgtcTGATAGAAATGAGGCAGATGACCAAGAGGTGAAGAATATTGTTAACATGCTTCTGAAAACAAGATCACTAGCAACATTGGCAGCTGCAGAATGCCCATTATCTAGTGTAAGTAGTATTGGTCGTTATATTGCAGATTTGAATTTTCAAGGCCTATGTTTATGTCGGTATATGAACTGTTAGCTTACTTCTTTTTGGCTGATTTTAATATCATTTGATGTTGTCAGGGCATGCTGAGTCTCATAGCTCAGGGCAAATATACCAGTACGATTGGTCACGACAAATGCCAGGCATTTATTCGCTGGTTGAGACGGCAAGACTTAACAAATGAAGCAAACTCTAAAGAAAGGATCTTACTTCCAAAACCAAGTCAGCTTGCTCTGCCTGCCCCACCAGTACCAAGTAAGAATGTTAGGCCAAGGATCACATTCTCTCAGAATGAAATTGATAACCTGACAGAGTGGTTTAACGAAGATGAACGGCCGAGCAGAGAAGTTATGCAGCAATATACAGACATTATAAACATCCCAAGACAAATGGCCTCGATCAGATTGCTAACACCAGAAAGTATATACTTTTGGTTTAAAAACAAACGGTCGAAGAACAGAAAAGAGGAATGTAGCATTCTTGAACCTTGGGAAAGAGATCATGAAACATCAGGGGATGGGGACACACCTCAAGTTACTATGGCGACTAGTGACACACCTCAAGTTACCGTGGCAACTAGTGACATGCCTGCAATTGGAAGCACACCTCAACTTACTATGGGAAGAACACCTCAAGTAACCAGGGAAGTGGGGGAAAACGGTGGTACATCTGTTTCTATGGCAATTACAAGTAACAGCCGAGATAGTATTGGTGAAATTCGTATGCCAATTAATGGTCTAGCTACCATGATGGCAAGGTATTCACCACAAGGCAGGCAACTAGATTATGGGGAGTCACCAACCAAGCCACGAAAAATACCCAAATCACGAGTTACATTCGACCCGCAGACCGAACTAAGCAGTCTTGACACATGGTTTAGCGATAACGAAAGACCAGATAAAGAAATCGTTGAGGAGTATACCAATATATTAAACAAAGCAAGGTCACAGAAGTCAAAGAGGATGTTGACCTCAGATAGTATTGCTATGTGGTTTAAAAATAGGAGAGCTAAAAGAAGAAGGAGTGAGGAGAATTTTGTTTATCCAGGCGAGAACAGTGTTGGTGGGCAGCAAGTTGTGCAAGCTATTGAGGAAAATAAGAATGGAAGACTAGCAGATGTGACTACTGAAGCTGCAGATGGCACTACTGTTATGGATGTGGCTGTCACTACTGCTGCAGACGTACCTGTTGTTGCAGATGTTAATGTAGTATCAAAAACAGATTCTATAGATGCTACTACAGGCCATGTGGTAACTGATGATGAACATcgtgaacaaaatatatatGGTGCAGGACTTGTATTGGTCAAAACAAGTGAAGCAAAGCAGATGTAA

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	Homeobox

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046	Homeodomain	Homeodomain	Domain	Interproscan
PF16557	CUTL	CUT1-like DNA-binding domain of SATB	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001356	Domain	Homeobox domain	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR032355	Domain	SATB, CUT1-like DNA-binding domain	Interproscan
IPR038216	Homologous_superfamily	SATB, CUTL domain superfamily	Interproscan
IPR039673	Family	DNA-binding protein SATB1/SATB2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15116	DNA-BINDING PROTEIN SATB FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0006338	Biological Process	chromatin remodeling	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-