Gene detail

Detailed information of Clavulariidae_g12241 in Trachythela sp. YZ-2020 Gene info

Gene ID	Annotation	Contig	Start	End	Strand
Clavulariidae_g12241	FLAP ENDONUCLEASE FAMILY MEMBER	ctg000240	306418	311957	+

Gene Structure

More details in Jbrowse Sequence

CDS

Clavulariidae_g12241

Transcript

Clavulariidae_g12241

ATGCTGAAACGGTTTTGTTCTGAGCAACCAAGGCAATGGCATCGATACATAAATGCATTGCTGTTCGCTTATCGTGAAGTGCCACAGGCGTCAACTGGCTTCTCGCTGTTCGAGCTTCTGTACGGACGGACAGTCAGGGGACCTATGACTATCCTGAAGGAACTGTGGACTGAGGAGTTTGATGGGTTGGAAGTGAAGACGAGCTACCAGTACGTGATTGACCTCCGCGAGAAATTGGAGCAGACGCTCAAGTTGGCCCAGGAAGAGATGAAGCGTGCACAGTCCAGATATCAGCGATACTACAATCGAAGTGCGCAAGACCGGAAGTTTGTGATTGGTGATAAGGTTCTCATCCTACTGCCGACCGATAAGAATAAGCTTCTCGTGCAATGGAAGGGTCCATACGAAGTTGAGAAGACCGTTGGGACCAACGACTACGGAGTTCAGATCGGCGGAAAGGTGAAGACTTTTCACGCGAATGTGCTCAAGAAGTATGTTGAACCCTGAGCAAGATAACGACCGAGTGGAAGAATTAGGCGACTATGACTTACTTACAGCGAATATGAAGAGGACGGCGTTGGTGGCCCGGTCCTACACCTGACAACAGCCGCCATAATCGAGACCAGTATCAGCGGATCCGACGGAGCTATCAATGATAAAGAGCTCCTGTAGCTTGGCCCCACGAAGACATGGTCCTTGGTGAACAGTTAAGTGAAGAGCAGAGAAACCAGGTAGAAGAACTGATTTATCGATATGAACACATCTTCACTGACGTACCTGGCAATAGTACACTCACTGAGCACCACCTACAGTTGAGGTCCGAGGAACCCGCCCGTTCCAAGCCTGTTGCCATACCCTACAATGTACGAGAATCCCTGAAAGAAGATATCCAGTCAATGTTGCAGATGGGCGTTATAAGAGAATCGAAGTCCCCTTACGCGTTACCAGTGGTGGTAGTCCGAAAGAAGGACGGAACGAATCGGGTGTGTGGATTACCGTAAGCTTAACCGCTTGACAGTGTTCGACCCGGCGCCTGTCAACACTGCAGAATAAATATTCCAGAAAATGGCCAAGAAAAAGTACTTCACGAGAATTGATTTGAGCAAAGGATACTGGCAAATTCCTGTTGCAGAGGAAGATGTTCCTAAGACGGCGATTGTTACCCCGACGGGACGTACGAATTTGTCAAAATGCCGTTTGGGATGGTCAACTCGGGAGCAACACTTGCGAGAGGAATGCGGAAGTTATAGCCCTGGACAAGTTGGTTCAACGATTGTCGGCAGCCAACTTGACGGCAAGACCTACGAAGTGTGTCATAGGAGCGAAAGCCATCGAAGTAATTGGTTACCGGGTGTCTGAAGGCATTAAGGGATTGCAAGAAGACAACGTCAGAAAGATCGAGAATGCGGCCAGACCGAAGACCAAGAAGGAAGTGAGGGCCTTTATCGGACTCACTGGATACTATCGTGAATTTATCCCGAATTATGCGGCGAAGGCGGTGCCCCTGACCGACTTAATTAAGAGGGGTCGGCCCAACAAGGTTCCATGGGAACGGCCGCAAGAGAAAGCGTACGCCACGTTAAAGAGAGTGAACCGATCCTTCATCTCCCGGATCCGACCAAGCCGTTTGTTAAGAATCGATGCCTCAGATATAGGAATAGGAGCAGTGTTGATGCAAGACCACGAGGGGAAGTTGTTCCCTGTTAGCTACGCCAGTCGGAAGTTACTGCCAAGAGAATGCAAGTACAGTACCATCGAGAGAGAATGTTTGGCAATTGTCTGGACGATACAGAAATTCCGATTGTATCTTTATGGAAGAGAGTTCGTACTCCAAACTGACCATCAACCATGAGATGGGCAATGTTCCTGCAGAGTTATGCTATGAGGTTTGAATCTACCAAAGGATCAGAAAATGTAGGAGCGGATTATCTGAGTAGAGTCTACTAGTACTGAGGACTTCAATATAGTTAATCATAGGTTGGACTGAATTTGTGTTGTGGCGAAACTTACTTCGTAACTTCCTCTTAAATGGGGAGTCGTGTCATAAATTCTCTATAAATAATTGGCTATCATATAGATTATTATTAGCTAATCATACCTTATAAAGAGTTGTTATTGTGTTTTTGGGAATGTTGATTGACAGATAAAGTGGAAGGAGCAGGAGATAGAGGAGAGAGACGGGATTTTTGTAAAGATATAgatatgttttgttttatgcaaTGAAAATTATACTTTTATTTAACGTTTAAACTTGGTTAATCGCTCGAGACCGATTATAAATACGAACTTTGCGACAGGTTGTctcaatttaaattggttatttcaaCCAATCCGCTTTTATAACAAAATGTGAACTATTTGGGCGGAGCAAGTGTCGAGTAAGGGACGGTGCTTAATCAGGCGGTGTGCGCACTACGCCTCAAAGGCTTCTGGGTAAAATCGTAAAATTCAAACATTTGCATAAAGGCGCCGTGTCGCTCACAGCTCTTTATCTCTGTGTCTTTTAATACATACTGTGCGTTGCATTTTGGAATGGGTATCAAAACACTGCTGCAGTTTTTGGAGCAAGTTACTGTAAAAGTTAATGTTGAATCGCTAAAAGGGCAAACTGCGGCAGTCGACGCTTCTTGTTGGATTCATAGAGCACTTTCCGCAAGCATAAAGCAAAACGGCGATGATCGCAGGTGAGATATTTGGCATAATATATTCATGAGTTTGTCGTTTGAATTTCGCTTTAAAACACGGGCTCAAATAATTTCATTGTTTCAGATTGCAAGACATCCTTGAATCGTATGTGGCTGTCCTGCAACGAAGCGGGATAAAACCTCTTATCGTGTTTGATGGCTTGCCATTGCCAGCTAAAGAAACAGAACGAGCGAAGAGGACGAGGTATATATTGATAATGTCCATTGAGACGGCTTGCGAATAAACGCGAATCACAATATGTAAATCATGTAAACAAGTAAATCAAATCGTCTCTTACAATTAATACTGTAATCATTAGGAAACGAAACGACGCAAGAACCAAAGCAGCCGAACACATGAAGGAAGGAGAAACATCAACAGCTAACAAGCTATTGGCAGGATCTGCACAAATTACAtacgccatgacaacaaaatttattagAGTAAGTTGTGCTTGTTATTCGCTTAGAATTTAGGTGCACAAACTTGCATATACGTGGTATTGACTTGGAAATattatgtttatattattctaGTTTTGTCGCAACAAAAACATTAACTACATCGTTGCACCATATGAGGCTGACGCACAAATTGCATTTCTTACAAGAAATTGTCATGCGGATTTTGCCATCAGCGAGGATTCCGATTTGTTAGCGTACGGATGCCAAAAGGTCAGTATTAGCGTTATAATTTACAGAACAGTGTTATTAAAAACTAGACGAGATGATCAATGCCATATGTAATCGTTTCATAGTAGTCGACAGGGGAGTAACTATAGTATGACATTGAAATCAGTGATAATTTTTTACCTCttcgtatttttatatttacctGACCTGTTCAGATTTATATCAAATACCCCAAACCCTTAAATCGAGACAATAGCAGGCAGTTAACTAATAATTGTAACAAATTGGTGCTGTTATATTGTGAATTTATTCCTCAATCATTAACACTATTTATTATGCTTGCAGGTTTTATTCAAAATGCATATGAATGGCATGTTTGATTGCATAGAATTGAAGGAAGCTCTCAAATATCTTGTAATGACTGAAGATGATTTCCTTCACATGTGCATAATTGCTGGCTGTGATTATCTACCCAATATTAGGTGTGTTGGTATCAATAAGGCCAGTAAAATGGTCTTGGAAGGGGCTGACCTAATGAAGAGATTGTTAGCATTGAAATATGTCCCCGAAGGATATGCATGTAGTTTTAGGCAGGTCAAAGCTGTTTTTCTCCACCAAACAGTGATAGATTCAACAACTTTAACAACCATCCCTTTGACACAGTGGGAAGTTGCAGAAGAAACAGATATTCTTCAAAACCTCTGTGGAAAGTATCCTTATCATATATAAAGTCTATACTTGTTTCCAAGTACTTTACACTGTTTAATTGTTGGcttcatccataattatcaccATTGTCACAAGTGTAGAGTGATCTTTTGGCCCCCACCGCCTCCCAGAGCACACTCTTAAACGTTGAACCTCGGAATGAGTCAGTCATCAACATTTTAAAAGCAACATTAGTCATGAACGTCCTCTCTCCCAGCATACACTTTGTACACTTGTGAAATTGTTGATAATCAGGGATGCCCGTAGTTAACAGGAAATTAGATCTTCTTAATCTTTGTCAACTGTAAATTTTGTTCAGAAAGTTATATTCCTTAAATCAAACAAGTTTACTGTCGAAGGACTATTCTTTGAATCTTGCCACTGGAAACATTAATCCACAGCAAATGGATGTTGTATTAAATACATTTCAGCTTCCAACACAGGTAATAATTGTACGTAAAGTTGGTTTGCTAAATATCCCAAAACGCACCAGAAACAAAAGTTTTACTTCAGCaggtatttttatttaataattaccAATTAATGTAACTAATGAAATATCATAATTTAATCTTATTCATAGAGTATGTCCAATGAAGAGAAAGTAATCCAGGCACCCAACAGCAAAGGCAACCTGGACACCAGAAATAATGGTTTGTTTACTCTAATTGATTTACTTTTAATTACATCATAATTAATAATCATAAAATCTCTAAGGGTTTTGTTTAGAACTCTTTCCCAGGTTATGCAAGGATTTGCAGAATAATTTTTACTATGAAATTCCAATCTTTACTGTTTCAGTGtgtatttttatgatatttCTAATTTATTTTGTTAGATTTTAACTCTTCTGAAGTGCAGGTTACCATCACATCAATAGATGAAGCTTGGTTCCCATGGGTTGTTCCTTCCTTTCCTGTTTTGACTATGAGCCTTAGGAAAATCAAGTTCAGAAGCAATGGTGAAAACTATAATGGAATAATTAATAGAGATACAAACGTCAAGCCAGGAAAATGTATCTGCACAAGCCATTGCAAAATTAACCTTGACAACGAAGAATACATTGTGCTATGGGTGGTTCTTCCTTTAGAGAGTCCTAATGAAAATATGGAACAGGATGTCACTCCTTCACAAAATGATCTAGACTTTAAAGGTCCACATACTCTCTCCTTCAAAGTTATGGGGACTTGTTACTGGCCTAGCAGACAAGATGCCCTCGAAAAGGGCTATTCACGTTTGAATGAATACAATCGCCATGTCTATGCCAAACTTCAAGAAGAACCAGAGAATATAACAGACAATGAGGCAATTGCTGTTTATATTAGTGTTGACGATTGTACCAACGAGTATCAGAAAGTAGGGTACATTGCAAAGGAACTAACACCTTATTTAAAaccaattttgaaaaatttggaTGTTTCAGTGAAAAACATTCGTTTTTGTACAACTTATTTTAGAATGGGTTATTACATGACATTAGACATTACAAAGGAGGATTGTGGCATAAAAGAATAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00752	XPG_N	XPG N-terminal domain	Family	Interproscan
PF00867	XPG_I	XPG I-region	Family	Interproscan
PF08797	HIRAN	HIRAN domain	Domain	Interproscan
PF17919	RT_RNaseH_2	RNase H-like domain found in reverse transcriptase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006084	Family	XPG/Rad2 endonuclease	Interproscan
IPR006085	Domain	XPG, N-terminal	Interproscan
IPR006086	Domain	XPG-I domain	Interproscan
IPR014905	Domain	HIRAN domain	Interproscan
IPR019974	Conserved_site	XPG conserved site	Interproscan
IPR029060	Homologous_superfamily	PIN-like domain superfamily	Interproscan
IPR036279	Homologous_superfamily	5'-3' exonuclease, C-terminal domain superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR041577	Domain	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR044752	Domain	Exonuclease 1-like, PIN-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11081	FLAP ENDONUCLEASE FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0004518	Molecular Function	nuclease activity	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0016788	Molecular Function	hydrolase activity, acting on ester bonds	Interproscan
GO:0016818	Molecular Function	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	Interproscan
GO:0017108	Molecular Function	5'-flap endonuclease activity	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-