Gene detail

Detailed information of Chiridota_g8950 in Chiridota heheva Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Chiridota_g8950	ATP-BINDING CASSETTE, SUB-FAMILY H, MEMBER 1	chr_4	49916351	49985815	+

Gene Structure

More details in Jbrowse Sequence

CDS

Chiridota_g8950

ATGACCAGTCTTGGCAGGGAAGATGATTATGGGGCAACACAAGACATGAAGTTACCCCTAAACCAGGGTGGTCATCAGTTCAGCAATGGCTATGGCAGCGTAGGGGGAAATGGCGATTCCCCAGGCCCTCTTGCCATTGATTGCAGACACCTTTATAAGAGCTATGGCAGCGGCAAGAACACTCAACATGTTCTTCAAGATTTACGAATGCAGGTCCCAAAAGGAATCATATATGGATTGCTTGGACCAAGTGGCTGTGGGAAGACTACTTTGCTCAGATGTTGTCTTGGAAGGTTGGGCTTTGACAAGGGCATTATAATGATGCTGGGTAAACCTCCAAACACAAGGGGACATGGGATACCCGGACGCATGGTGGGCTACATGCCTCAGGAAACAGCTTTGTATTACCAGTTCACCATCAATGAGACCCTGAACTATTTTGGAATGCTTCATAAGTTGCGAGGGGAGGCCTTGGAGAGGCGCAAAGAGTTTTTGATAAACCTGCTGATACTTCCTGACAAAAATTCCCTGGTGGGAAATCTGAGTGGTGGTCAGATGAGGAGGGTGTCATTTGCGGCAGCTCTCCTTCAGGAACCAGAACTTCTGATTCTGGATGAGCCCACAGTCGGTGTTGACCCCCTGCTCCGAGAAAAGATCTGGGAATATTTGCTGCAGTTTGCCAAAGGAGGAAAAACAACTATTATCCTCACGACTCACTACATTGAAGAGGCTCGACAGGCAGACATGGTCGGACTGATGAGGAATGGGAAGCTGCTTTCCGAGTCATCACCCCAAGCTCTCATGGATGCACATCAGACACCTACTCTGGAGGAGGTATTCTTGAAACTTTGCATGGCAGATGCTACTTATGAAGAAGATGATGTGCTAGCTTTGAGCCACAGCGAGGGAGCTAATGTTCCTTTTGAGGCCAAAGAAGGGGAACAAACAGTTTTGCTGAATGATGAGAAGATGGAGAAAGGTGACCCCCAATCCTCCAGAACCTCTTCTCATCCAACAGACGATGAAATGTTCGTCAAATTTGAGAAGCCACCTTTCAAATTCTGGGATTTGTTTCCAGTGTGGCTGAATATCTGGGCCCTTATCTACAAAGACTTCATCAAGATGCACAGAAGTCCAGGATTGGTCTTCTTTCAGTTTCTGATTCCTGTGATTGAGATCACCCTGTTTTGCGTCTGCATCGGAAATGACCCCAAAAATCTCAAGGTGGCAATTGTAAACGAAGACCAAGGCTTCTTCAATCACAATTACAGCAATGATTTCTTGAAGCATTTGAGCAATAAAACGATTATTCAGGTTCCCATTGCTAACTATACGGACGCTGTTGCAGGAGTCAAGGCAGGTGACTATTGGGGAGTCATGCAATTTGAGGAAAACTATTCACAAGACTTAATGGCCAGATTTATAGAAGGTAGAAAAGCAACCAATGAAACACTAGAGGGCAGTGTGATATATGTCAGATTAGACATGAGCAATGCACAAGTTGCACTTTCTTTACAAGGAGAAATAATGACAGCGTACCAAGATTTTCTTGATGAAGCATTAAAAAATGCTAGCTTGAATCCCTTGCTTGGACAGCTACCAGTAGATGTAAGTCACCCAATCTACGGCTCGGTGGATACAGACTTTACAGATTTTATGGCACCTGGTGTTGTTCTGAGTATTGTGTTCTTCTTGGCGGTTGGACTGTCGGCTTTGACGTTTGTCACGGAGAGGAAGGAAGGTCTTCTGGATCGTTCATGGGTCGCAGGAGTGAGTCCAGTAGAGGTCATGTTAGGTCATGTGATTACCCAGTGCATCATCATGTTTGTGCAGATCTTCTTTGTCGTTCTCTTCATGTATGAGGTATTTAAGGTGCCACTAGAGGGCAACCTCTTCCTGATCGTCTTGATGGCAGCATTGCAGGGTCTGTGTGGTATGGCGTACGGGTTGTGCATCTCATCCGTCTGTGATGAAGAAATAGCCGCTATTCAAGTTGCCCTTGGTTCCTTCTATCCAATCATGCTGCTCAGTGGTATCATCTGGCCAATCCAAGCCATTCCCTTCCCTCTGTACTACATCAGTCTTGCGATGCCACAAACATATGCTGCAGAATCACTCCGAGCGGTATCACTTAGAGGATGGGGTATTGACCATTTTGAAGTCTATATGGGATTCGTCGTAACATTAGGATGGAACAGTGTGCTTCTCGTCTTAGCCGCGGTTGCCCTGAAATTGAGGAGATAA

Transcript

Chiridota_g8950

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00005	ABC_tran	ABC transporter	Domain	Interproscan
PF12698	ABC2_membrane_3	ABC-2 family transporter protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003439	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR013525	Domain	ABC-2 type transporter, transmembrane domain	Interproscan
IPR017871	Conserved_site	ABC transporter-like, conserved site	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR047817	Domain	ABC-2 type transporter, transmembrane domain, bacterial-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43038	ATP-BINDING CASSETTE, SUB-FAMILY H, MEMBER 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0140359	Molecular Function	ABC-type transporter activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-