Gene detail

Detailed information of Chiridota_g7275 in Chiridota heheva Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Chiridota_g7275	PROTEIN O-MANNOSYL-TRANSFERASE TMTC2	chr_4	1338064	1463472	-

Gene Structure

More details in Jbrowse Sequence

CDS

Chiridota_g7275

ATGCTTGAAATCTTTATGTGTGGAGCCGCTGCATTGTTGGTGTACTGGAATGCGCTTTTCGCGGGATTCGCGTACGATGATACACGTGCAATAATTCAGAACCCAGATTTGCTGCCATCAACGCCGTTAAGTAATATCTTTAAAGATGACTTTTGGGGAACCCCAATTGGTCATAGCGGAAGTCACAAGTCATACCGGCCGTTGTGCGTTCTTTCATTCCGTCTCAACCATGCGTTTGGAGAACTTGAGCCAATGGGATACCATCTTATAAACGTTTTACTTCATTGCCTTGTTACAATGATATTCACATACACAGCTCGAAAATTATTATTGCGGACATTTTCAACGACGGTGGCAGGATTGATCTTTGCTGTCCATCCGATACATACGGAGGCAGTGACTGGAATTGTGGGAAGGGCAGATGTTGGGGCCTGCCTGTTCTTTCTTTTATCATTCATTTCATATTTCATTTACTGTGAAAGGCGGACTGGTGAAAGTTGTTCAAGATTGACGTGGGTGTTTCTTAGTAGTTCTTGCGCCTTGTTTAGCATGTTGACCAAGGAGCCTGGAGTTACCATTCTGGCCGTCAACATGACATATGACCTCTTTGTGTTTCATAAAATTAGTCCTTTTGATTTGCCACAAGTTTTTGTCAAGAAAAAATATTCATGGTTACGAGAGGGTATGTTTCTGCAACTGACGGCTGGAGTTTTATTTGTTGGATTGCGTTTGTACATCATCGGTTCATCACTGCCAAACTTTGCTCCATCTGATAACCCTGCTGCCGACTCTGACCACATCCTTACCAGAATCTTAACCTTTGCCTTCTTGCCCGCTTTTAATTCATGGCTCTTACTATGCCCGAACACTCTTAGTTTTGATTGGTCGATGGGAGCCATACCTCTTGTAGAAAGTTTGTTTGATTTTAGGAATGTATTCTCTTTGACTTTTTATTCATTTCTTGTGATTTTATCTTTGTGGATATTGAAGGAGCTCTCTGTTCTCTCAAGTGATTGTGAAGAGCTTTCAGATGAACAAGTGCCAACAGAACTGAATGGGAATTCTTTCAAACTCGGATTTCACATCTTGAACAAAAGGAATGGTACTAAACCTTTCTCAAGAACTGTGAGCGTTAACAGAGTGAATGGAGTTTACAGAAGAACTTCCTTAAGTGCAATAAGAAGAGAGGCATCTAAAAAAGAAGCCTCATCTTTTACTCATGAAGACTTCTCTTCTAGAACAAAGCAAAGAAGATGTGTTAACGCACTCATCATAAGCTTAGCCTTCCTCATCTTTCCATTTCTCTTAGCCACAAATTTATTATTCTACGTAGGTTTTGTTATTGCAGAACGTATTCTTTACATTCCAAGCATGGGATTTTGCCTTCTTGTCGCGATTGGTGCGGAACATTTGTTGGAAAAACAAACGCCAGTGTTTAAAAAAGCTTTGTATGTACTCCTTGTGTGTCTGTTGGCATTGTATGCTTGTAGGACTGTACGACGGAATCAGGACTGGTTCAGTGAGGAGACTTTGTATCAATCAGGAATCAGTGTAAACCCGGCCAAAGCATGGGGAAATCTTGCCAACATTTTGAAGACTAACGGTAGAGTTGCAGAAGCTGAGGTGGCCTACAGGAATGCGCTGATGCACAGGAGCAACATGGCGGATGTGCATTATAACTTGGGCATTTTGTTACAAGAAGAAgagagataccaagaggccattgagagctaccagagggccatCCACTTCAGACCAAGATTGTCAATGGCCCACCTGAATCTTGGCATTGTGCTTGGCCTGGTTGGCCAAGCTGTGGATGCGGAGAAGGTTTACCGGCATGCTTCAACATTGACGGATGACGGGCTGAAAGATCCCAAGAACCAGATAAAGGGGGTGATCTCATCAATGTTTAATCTCGGCAGGCTGATGCAAGACCAAGGAAGATATGAGGAAGCTCTACAAGTTTTCCAGGAGGCATTGGAAAGGAAACCAGATTTCTACCCACCCCAGAGCCTGTACAACATGCTAGGGGAGACATATTACCACCTTGGCAATCTGCAGGAGGCAGAGAGATGGTATAAGCAGTCCCTGGAGAATAAACCTGACCACGTCCCTGCCCATCTAACCTATGCCAACTTACTCAGCAGAATGGGCCATACGAAAGAAGCAGAAGATTTGCTGCAACGAGCCGTGGAGCTGGAGCCCAGGAATCCTCAGGTTTACAGACACTATGGACAAATCATCAACGAGCTCGGGAGGCATTCTGAGGCTGCTGAACAATACCAGAAATCATACGACTTGAAACCCAATGATTTTGAGATAGCCTTTAATCTTGCCAATGCTCTGAGACAGGCTGGTCAAAATGAACAGGCTGAAGCTTATTACAGACAGGCAGCACAACTGaaacctaatGAGGCAAACCCCCTCATGAACCTTGGTGCGATGCTTCACTTGAACAATAAGTTAGAAGATGCAGAAAAAAGCTACCTAAGGGCGCTAGAGCTGAAACCAGGAGATGAAACTACCATGGCGAATCTGAAAAAATTACGATCTTTGATGAAGAAGAGAAGCAGGAGAAGATGA

Transcript

Chiridota_g7275

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00515	TPR_1	Tetratricopeptide repeat	Repeat	Interproscan
PF08409	TMTC_DUF1736	Protein O-mannosyl-transferase TMTC, DUF1736	Family	Interproscan
PF13181	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF13432	TPR_16	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003107	Repeat	HAT (Half-A-TPR) repeat	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR013618	Domain	Protein O-mannosyl-transferase TMTC, DUF1736	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR052384	Family	O-mannosyl-transferase TMTC	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44216	PROTEIN O-MANNOSYL-TRANSFERASE TMTC2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000030	Molecular Function	mannosyltransferase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005789	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0006396	Biological Process	RNA processing	Interproscan
GO:0035269	Biological Process	protein O-linked mannosylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-