Gene detail

Detailed information of Chiridota_g10910 in Chiridota heheva Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Chiridota_g10910	VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED	chr_5	51968949	51992701	+

Gene Structure

More details in Jbrowse Sequence

CDS

Chiridota_g10910

ATGCATTTGTTTTCATTTTCATCAGCACAAACACAATGCGGAGAGACGTTACAAGGAACGACCGGTGGAATCCAGTCTCCAAACTACCCACAAGACTACGCCTTGGATTTAGCGTGTACCTGGGAGATAAATGTGGCACCTGGTGATGTTGTTGAGCTAACGATTGAAGATTTCGAACTCGAGGACTCACAAGATTGCCAAAGTGATGCCTTCATAGTTTACGACGGCACTACCACCGACACATTTTTGATACTGCCGTCTTGTGGACAAAGTTTAATATGGCCAAACTTTCCCACGCAAATCGTGTCAAATGGGCCAAAGATGAGTATTACTTTTACAACCAATGACAACGTCGTTGCCAAAGGCTTCCGTGCAACTTACCGTGCAATTCCACCAAAGACGGAGTTGTTTTACATTGTGGACCAAACTGACAGACGAATTCTAAGCATCGCCCGGAGGAGCATTGGAGTCCAAGCCATAAATCTACCAGATTACTTTAGTTTAGTAGCATTAGCCTTGGATCCTGTGTCCATGCATCTTTATTTCTCTGACGTCTTAGATGGAATAATTGGTCGATTTAATGGCACTGATCAGATGATTATTCACTCCGACAGAGTTCAAGTCGCAGATGGGCTTGTTGTTGATCCCATTTCTCGGCTCTTGTTTTGGACCGACACCGGGTTGGACACTATTTCGGTTTCTCGGTTAGACGGTACATATCGTTATACGTTGTTTGATGCCGATCTCGACGAGCCCAGAGGAATTGCTGTGGATCCAAATCGCGGCCTGATATACTGGACCGACTGGGGAGTTTCACCTAAAATCGAACGTGCGTTTTGCGACGGAACAAACCGGCAAGTGATTGTAGATTCTAACGTCGCAGTTCCTAATGGATTGGTCCTAGATCAGACAGGTCGGTTCCTTTACTGGGCAGATGCGACCCTGGACCGCATTGAACGCATCACGCTAGACGATCTGGGTCTGCCGGTATTTCGAGAGGGGATCCGAGAATTGGGATCGGACCACCCGTTTGACCTTGCTCTTAGTGACGGTGCCATATTCTGGACATCATGGCAGCAAGAGGGCATTCGGTATACTACCATTGAAGAGGGACAGCCAATCAATTTCCTTCAAATTGCCGGGAACAGACGACTGAATGGTTTGGAAGCAATGGATGCTCTTTGGACGGAGGCAATGGTGGATGTCCTGGTCTCTGTCTGCCAACACCAGATGGAGAGAGAACTTGTGTTGGAGGTAAATCATTATACGTTTTATACAAGCAAAAGAAATACCCAAGTGAGAGATCCATGTCCGCAAGGCTGGCTTTTGAGCAACGACAACTGTCACTTTTTCGTCACAAACGACACCATCCTACCGACACTGTTTGCGTCACGACAACGCATCTGTGCAGTGATGCAAAGCTCGCTGGCAACGTTTGATCCACCAACTGCATATACGGAATTTTTGAGGAGCAGCTTGCCCATAGTCAGGACAGGGTACATTTATGGACTTGGACTAAATGATCGTCGAGAGGAAGGTACGTTTAAATGGATTGATGGCGCTAGTCCGGAAGAAACGGCGTGGGCAGCTGGTGAACCGCTGGTCGGAATCAGTGGACAAAATGCAGACTGCGTTGGCTTGTCATCGGAGACTCTTCAATGGCAGAATATCCCTTGTTCAGATAGAACTGCCTTCGTATGTCAGAAACCAGTGCGTTTCGTGGATACTTCGTGTGAACAATCTGACACCCAGCCAAGGGTTATTGGTGGTCAGGAAGCAAGCACAGGTATGTGGCAAGGCATTGGCTCCATGCGTACCCGTGGTGATTTGCATTCATGTGGAGCGACGCTTATCGCGCCTGAATGGGCTGTTACAGCTGGACATTGCCTAGATCTTAAATCGATCGTTTTTGGAGATTTGACACCCGACACAGCCGATGATTCTCCATCTCGACAAGTTCGAACGTTTACAACTTTCATAAATCCAAATTCTCGACCGGAATTTCAGAACGACGTTGCTCTACTCTACTTAGATAAGCCCGTGAAGATGAGCCCCACAAGCCAACCTCAATGCCAGTATATTCCAGAATTGGATCCAAATGAACAAAGTGATTTACATTCGTGTGCGATCGCTGGATGGGGTGCCCTAGACGACGTTGGTAAGCAAAACGACGTGTCGGTGGATCTTCTACCACAGCAGGATTGTACGGTTTTCGGGAAAGCGTTTCGGTCTGATATTATGTTGTGCGCAGGAAGACAACAAAGAAACGGGGGTGAAGGCAACAGTTGCAGGGGAGACAGCGGTGGACCATTAATGTGCCTTGATAGGAACAACCGATGGGTGCTGGCTGGCGTGGCGTCCTTTGGTGCTGTGTCATGTGAAAATAATAATGCCCCTTCTGTATACACGAGGTTGTCAGCTGTCTTAGATTTTGTTGATAACACAAGGGGTGTAGATTTCTTCCGATGCACCGATGGAAGTATTGTTCTTGAAAGCCAGATTTGCAACTTCGTTGTCGATTGTGCTGATATGTCAGACGAGAGTGGCTGTGAACCATTGACAGAAGGTTTTGCAAGCAGAATAACTTCACCAAAGTACCCAGATATCACCAATTATGTGACGAAATCCTGGATGTTTACCCCTGGATCAAACATGGAAATCGTGATCTCAGTTGAGGACAGAACATTAGCTACTGAAGAGGGATCATTAAGAATAACCAGTGGTTCCACGTCAGTGGAGTTAACTCTAGACAATCCTACCATGACGTCATCAGAAGCTGTTTTATTAGAATATGAGAAAGGAGTTCTGAACTCTCTGGCTGGGTTTGCCGTTAATGTACTGACACGAATGCTATAG

Transcript

Chiridota_g10910

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00058	Ldl_recept_b	Low-density lipoprotein receptor repeat class B	Repeat	Interproscan
PF00059	Lectin_C	Lectin C-type domain	Domain	Interproscan
PF00089	Trypsin	Trypsin	Domain	Interproscan
PF00431	CUB	CUB domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000033	Repeat	LDLR class B repeat	Interproscan
IPR000859	Domain	CUB domain	Interproscan
IPR001254	Domain	Serine proteases, trypsin domain	Interproscan
IPR001304	Domain	C-type lectin-like	Interproscan
IPR001314	Family	Peptidase S1A, chymotrypsin family	Interproscan
IPR002172	Repeat	Low-density lipoprotein (LDL) receptor class A repeat	Interproscan
IPR009003	Homologous_superfamily	Peptidase S1, PA clan	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR016186	Homologous_superfamily	C-type lectin-like/link domain superfamily	Interproscan
IPR016187	Homologous_superfamily	C-type lectin fold	Interproscan
IPR018114	Active_site	Serine proteases, trypsin family, histidine active site	Interproscan
IPR018378	Conserved_site	C-type lectin, conserved site	Interproscan
IPR033116	Active_site	Serine proteases, trypsin family, serine active site	Interproscan
IPR035914	Homologous_superfamily	Spermadhesin, CUB domain superfamily	Interproscan
IPR036055	Homologous_superfamily	LDL receptor-like superfamily	Interproscan
IPR043504	Homologous_superfamily	Peptidase S1, PA clan, chymotrypsin-like fold	Interproscan
IPR050778	Family	Cueball/EGF/LRP/Nidogen	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46513	VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004252	Molecular Function	serine-type endopeptidase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0017147	Molecular Function	Wnt-protein binding	Interproscan
GO:0042813	Molecular Function	Wnt receptor activity	Interproscan
GO:0060070	Biological Process	canonical Wnt signaling pathway	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-