Detailed information of CAI8056877.1 in Geodia barretti Gene info
Gene IDAnnotationScaffoldStartEndStrand
CAI8056877.1TRNA 5-METHYLAMINOMETHYL-2-THIOURIDYLATE -METHYLTRANSFERASEcontig_9444_pilon3209033115+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF03054tRNA_Me_transtRNA methyl transferase HUP domainDomainInterproscan
PF20258tRNA_Me_trans_CAminomethyltransferase beta-barrel domainDomainInterproscan
PF20259tRNA_Me_trans_MtRNA methyl transferase PRC-barrel domainDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR004506FamilytRNA-specific 2-thiouridylaseInterproscan
IPR014729Homologous_superfamilyRossmann-like alpha/beta/alpha sandwich foldInterproscan
IPR023382Homologous_superfamilytRNA-specific 2-thiouridylase MnmA-like, central domain superfamilyInterproscan
IPR046884DomaintRNA-specific 2-thiouridylase MnmA-like, central domainInterproscan
IPR046885DomaintRNA-specific 2-thiouridylase MnmA-like, C-terminal domainInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR11933TRNA 5-METHYLAMINOMETHYL-2-THIOURIDYLATE -METHYLTRANSFERASEInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0002143Biological ProcesstRNA wobble position uridine thiolationInterproscan
GO:0008033Biological ProcesstRNA processingInterproscan
GO:0016740Molecular Functiontransferase activityInterproscan
GO:0016783Molecular Functionsulfurtransferase activityInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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