Detailed information of CAI8045807.1 in Geodia barretti Gene info
Gene IDAnnotationScaffoldStartEndStrand
CAI8045807.1ACTIVATOR OF BASAL TRANSCRIPTION 1contig_63_pilon3031239317-

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF21528CC2D1A-B_DM14Coiled-coil and C2 domain-containing protein 1, DM14 domainCoiled-coilInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR000504DomainRNA recognition motif domainInterproscan
IPR006608DomainCoiled-coil and C2 domain-containing protein 1, DM14 domainInterproscan
IPR012677Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan
IPR034353DomainABT1/ESF2, RNA recognition motifInterproscan
IPR035979Homologous_superfamilyRNA-binding domain superfamilyInterproscan
IPR039119FamilyABT1/Esf2Interproscan

PANTHER
PANTHER termDescriptionSource
PTHR12311ACTIVATOR OF BASAL TRANSCRIPTION 1Interproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0000447Biological Processendonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)Interproscan
GO:0000472Biological Processendonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)Interproscan
GO:0000480Biological Processendonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)Interproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0005730Cellular ComponentnucleolusInterproscan
GO:0034462Biological Processsmall-subunit processome assemblyInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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