Detailed information of CAI8043271.1 in Geodia barretti Gene info
Gene IDAnnotationScaffoldStartEndStrand
CAI8043271.1CHROMOSOME TRANSMISSION FIDELITY FACTOR 18contig_5851_pilon4980251934+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
--

Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00533BRCTBRCA1 C Terminus (BRCT) domainFamilyInterproscan
PF01653DNA_ligase_adenNAD-dependent DNA ligase adenylation domainDomainInterproscan
PF03120DNA_ligase_OBNAD-dependent DNA ligase OB-fold domainDomainInterproscan
PF12826HHH_2Helix-hairpin-helix motifMotifInterproscan
PF14520HHH_5Helix-hairpin-helix domainDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR001357DomainBRCT domainInterproscan
IPR001679FamilyNAD-dependent DNA ligaseInterproscan
IPR003583DomainHelix-hairpin-helix DNA-binding motif, class 1Interproscan
IPR004150DomainNAD-dependent DNA ligase, OB-foldInterproscan
IPR010994Homologous_superfamilyRuvA domain 2-likeInterproscan
IPR012340Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR013839DomainNAD-dependent DNA ligase, adenylationInterproscan
IPR013840DomainNAD-dependent DNA ligase, N-terminalInterproscan
IPR018239Active_siteNAD-dependent DNA ligase, active siteInterproscan
IPR036420Homologous_superfamilyBRCT domain superfamilyInterproscan
IPR041663DomainDisA/LigA, helix-hairpin-helix motifInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR23389CHROMOSOME TRANSMISSION FIDELITY FACTOR 18Interproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0003911Molecular FunctionDNA ligase (NAD+) activityInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0006260Biological ProcessDNA replicationInterproscan
GO:0006281Biological ProcessDNA repairInterproscan
GO:0006288Biological Processbase-excision repair, DNA ligationInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
------

TOP