Detailed information of CAI8038353.1 in Geodia barretti Gene info
Gene IDAnnotationScaffoldStartEndStrand
CAI8038353.1TRANSCRIPTIONAL REGULATORY PROTEINcontig_4921_pilon137170139301-

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00072Response_regResponse regulator receiver domainDomainInterproscan
PF00158Sigma54_activatSigma-54 interaction domainDomainInterproscan
PF00512HisKAHis Kinase A (phospho-acceptor) domainDomainInterproscan
PF02518HATPase_cHistidine kinase-, DNA gyrase B-, and HSP90-like ATPaseDomainInterproscan
PF02954HTH_8Bacterial regulatory protein, Fis familyDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR001789DomainSignal transduction response regulator, receiver domainInterproscan
IPR002078DomainRNA polymerase sigma factor 54 interaction domainInterproscan
IPR002197DomainDNA binding HTH domain, Fis-typeInterproscan
IPR003593DomainAAA+ ATPase domainInterproscan
IPR003594DomainHistidine kinase/HSP90-like ATPaseInterproscan
IPR003661DomainSignal transduction histidine kinase, dimerisation/phosphoacceptor domainInterproscan
IPR004358DomainSignal transduction histidine kinase-related protein, C-terminalInterproscan
IPR005467DomainHistidine kinase domainInterproscan
IPR009057Homologous_superfamilyHomeobox-like domain superfamilyInterproscan
IPR010114FamilyDNA-binding transcriptional regulator NtrCInterproscan
IPR011006Homologous_superfamilyCheY-like superfamilyInterproscan
IPR025662Binding_siteSigma-54 interaction domain, ATP-binding site 1Interproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR036097Homologous_superfamilySignal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamilyInterproscan
IPR036890Homologous_superfamilyHistidine kinase/HSP90-like ATPase superfamilyInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR32071TRANSCRIPTIONAL REGULATORY PROTEINInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0000155Molecular Functionphosphorelay sensor kinase activityInterproscan
GO:0000156Molecular Functionphosphorelay response regulator activityInterproscan
GO:0000160Biological Processphosphorelay signal transduction systemInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0006808Biological Processregulation of nitrogen utilizationInterproscan
GO:0007165Biological Processsignal transductionInterproscan
GO:0008134Molecular Functiontranscription factor bindingInterproscan
GO:0016310Biological ProcessphosphorylationInterproscan
GO:0016772Molecular Functiontransferase activity, transferring phosphorus-containing groupsInterproscan
GO:0016887Molecular FunctionATP hydrolysis activityInterproscan
GO:0043565Molecular Functionsequence-specific DNA bindingInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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