| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CAI8037700.1 | RIBONUCLEASE J | contig_4829_pilon | 14302 | 18712 | - |
| CDS | |||||
| CAI8037700.1 | |||||
| Transcript |
| - |
| Protein |
| CAI8037700.1 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01580 | FtsK_SpoIIIE | FtsK/SpoIIIE family | Domain | Interproscan |
| PF02811 | PHP | PHP domain | Family | Interproscan |
| PF07521 | RMMBL | Zn-dependent metallo-hydrolase RNA specificity domain | Motif | Interproscan |
| PF17770 | RNase_J_C | Ribonuclease J C-terminal domain | Domain | Interproscan |
| PF17854 | FtsK_alpha | FtsK alpha domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR002543 | Domain | FtsK domain | Interproscan |
| IPR003593 | Domain | AAA+ ATPase domain | Interproscan |
| IPR004013 | Domain | PHP domain | Interproscan |
| IPR004613 | Family | Ribonuclease J | Interproscan |
| IPR011108 | Domain | Zn-dependent metallo-hydrolase, RNA specificity domain | Interproscan |
| IPR016195 | Homologous_superfamily | Polymerase/histidinol phosphatase-like | Interproscan |
| IPR027417 | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR030854 | Family | Ribonuclease J, bacteria | Interproscan |
| IPR036866 | Homologous_superfamily | Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | Interproscan |
| IPR041027 | Domain | FtsK alpha domain | Interproscan |
| IPR041636 | Domain | Ribonuclease J, C-terminal | Interproscan |
| IPR042173 | Homologous_superfamily | Ribonuclease J, domain 2 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43694 | RIBONUCLEASE J | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0000166 | Molecular Function | nucleotide binding | Interproscan |
| GO:0003677 | Molecular Function | DNA binding | Interproscan |
| GO:0003723 | Molecular Function | RNA binding | Interproscan |
| GO:0003824 | Molecular Function | catalytic activity | Interproscan |
| GO:0004521 | Molecular Function | RNA endonuclease activity | Interproscan |
| GO:0004534 | Molecular Function | 5'-3' RNA exonuclease activity | Interproscan |
| GO:0005524 | Molecular Function | ATP binding | Interproscan |
| GO:0006396 | Biological Process | RNA processing | Interproscan |
| GO:0008270 | Molecular Function | zinc ion binding | Interproscan |
| GO:0016887 | Molecular Function | ATP hydrolysis activity | Interproscan |
| GO:0046872 | Molecular Function | metal ion binding | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| - | - | - | - | - | - |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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