Gene detail

Detailed information of CAI8037084.1 in Geodia barretti Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
CAI8037084.1	RAD54-LIKE	contig_4671_pilon	20673	39537	+

Gene Structure

More details in Jbrowse Sequence

CDS

CAI8037084.1

MDQSVRLLLGRIQSQLGAVLKDSGRDISAPRESWALNSRSPDHQKLDESGISSEEGYIPRQVYSQLTAIVSLVRDLQTTLDLSNTGTDSCSKTLSESGGEGRGDFACEEAENERMLEWYDRPMVYSRSSAQLLPAGCTPNLEVVVLKDTRMSRRAEVVVKPPSEQGPAGDRMRTRPVLPRGKFGTINYLESFSSSSSDLSSSSEDDRDTSGSRTRGERRKKRISRRGMEQKKKKVPRARHASDSKIGGGNFLIADFVVSSTDVGGTRGGSAVEGDWGAGVVQMECEIGEEEQGPPLSPLLSSSLALSTNSPSSTKVNAVYGDLSRAFLLENASGLSSSRKTDFSHSGQAIMALARRGESMVNPKKITKPCSVPITSLPRHTVMRYFSAVSVKEPSSTSVESLGSNEDLHRGKQLTSPNTLSKEEREDSVSTSGESFSSSESDSMLGPIKTPARRGLKSRSGERGVSGGYNSVAQRTPRRLGSGGRSPVARRSFPFSKPPSTPSLPFPSPTRSMAKPAHSTTPYKLPKLKSVSPSKRRLSLTKSPSPSKNSFKSPSPSNLSPTSSKSVTPTQNPSSPSSPPLSFNFSSPSPSESPSSPPPDPLPAPSKSPVTPTTSSNTVHATPSKPSKTGGSNTTKKSSPPNTKSTPSKSRKTHSNSKSSRRKDSRSTALDQTLAVDWSTDDDFQADPSPSFVISPTASNQKVTSSLPASVKTESSCDLSPVKSTPLLATMPPSPQSSSQVLRRSHSPINDEALTTGAAVDEEEGGEEEVPVNKKRKGSPKEGPPAVKAPAHSLSGNIAESGIDEGGSGLPVAISCAGCSRPIHWKTELIHRHKRLNVLICQYMLTASPLQACWNVYNTGSFEMNEGKEIYCTLCGDGGDIISCDRASCTSSLCQSCIRRIAGEQVLQRILEDESIVWECFCCNTSPLVHYRSLCDRLCQYYARDKQREKSGVVKGKARLFGDADSDCVARGESSGVKVKEVKGEMVGRGGEGVSGESSGERRSHSGGREERRGREGEGDKGDKGSGEQPGTRGEGGGGGDRKKPNKKRREVETSESDVDSSSCDGEDSPKVDTDDVSISDSSLFEGDVSSLKRVGGASSKYSTLSTGSKSSAKPVGEKNRAVPGSPESASNREKRAKRKKKGRVTLGASAHRMVFSSDSDSDFESPVKKTSPQRRRVASSSSSASNESRKEGETREKRPKKNVLLDVLSSGSEENESPQKESVKQPPSDSRNDSDSEAPSPALSLLSDEPESPVVYATPRKLHAALSSDSDDDMMVLERRPKRGHVLGSDTSSGNGGDKRSTTTKSDSPGGEKAAKKKKLQRGKRRKRVDSSGEEFVRGEMVVRGPKLKRRRVARAIMSDSDSSDSSGGEEEEEDEEEKSTPGRKRKKIRRVMTDAKLQSSTKEAQRAERERIERLKKRRLLGKEKDELILEADPVSKKAVLQVRQSLVESIKPHQWEGIRFLYDACVEKLETFREGRTQAGGAILAHCMGLGKSLQVIALIDALLMHQDSGVSRVLILSPVNTIYNWRNEFNRWIDPIDCDYHVYMLVDTSVEARVRKLERWFTGGGIIFIGYELYRNLVMGKRLRKKKKEAFEKYLLDPGPDIIVCDEGHVMRNASSNLFTVLQRVRTRTRIVLTGTPLQNNLVEYHTMVSFVKPNLLGTLKEFKNRFANPITNGQCRDSTPMDVRVMKNRAHILHEMLSGTVQVWNHPWVLKLDEDRKFEREERRRLYEESEDDSLDGFIVTGSEEEEEEERGRKSKNKESKVESVGRASSSSSSPVCSVTPGPSRATLSPETNQNLPTSTTMLGSSDEDDVTFPAISLKPDPDAPPPPKPDPDAPPPPKPDPDAPPPPKRVTRSTKPPSEEGDRGNVISPTDDKPSLRSSSPLQWYDDLLTPDCEASAGVSGKIQFLLELLEETGKLKEKVLVFTQSLLTLDMIEEVLGRPENGEWTPGLDYYRLDGSTRSEMRTHQMSHFNEFDNEQLRLYLISTRAGSLGVNLVAANRVIIFDACWNPSHDLQAVFRSYRFGQTKPIFVYRLLAKGTMEEKIYDRQVTKESLAMRVVDEKQIGRHYNASDLAALFMYSPAPPAPPPDQRPTYDRPEADMVLSSILGRLQPDWISSYHEHDSLLKHVFSEELSEEERKAAWDDYRAQIAQYDNATYYSALQNQLDTATAGGASLQQAVGQSSFPSASGVKNEGGILNHALQQQQHQHQLQAAQLLTILSNTNRNVENLISLLREKVSLGAHVRRDVPIPTALAVKMALNNKKITEHYALVDQGVTRVNSTLHKCHLGQIYLEPGINKQANELRARLISNLEILKSGSKNPHQGLAAVPHQPHVGGGAGPSSTSGAVVTGRQLDQRILQHVRQMQADVHRKLGFHTSLPIPRISYYLSTDTHMGGCLCGRRKDGRILLLGLDGVGKTSILRRLKSGLKEDWEPPGQTVGFNLETIPYKKRNYCIWDVSGKDKARPLWNRYFSDTIALIWVVDSSDHRRFQLCKQELHRVARDPELSKAAVLVYVNKQDLRDVCVFSSNTTQCVLAAGDVCPTGFYANGTVEETADCVPCNACEAGEGAAEPCGNHSDTVCEPCAEGHFSKLTSSGRECAECRFCTPGRMEAAPCTPARDRVCGSCSGGFFLFVDHTGSECLPCSVCPADGEVVRWADCAAAGEPEDNRCAPGVWTGKPSTTTATQPAVKPTGTVGTHKTKLPTNHGTFATMNNYDTIEKIDPLDRSTERTIAIVSVLFTVATALAFLLALTCLFREKIHRICRRASAKKKILSSQHRYFKKTRNFHYPVQVQDDSATVEVTYASSIT

Transcript

Protein

CAI8037084.1

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00020	TNFR_c6	TNFR/NGFR cysteine-rich region	Domain	Interproscan
PF00025	Arf	ADP-ribosylation factor family	Domain	Interproscan
PF00176	SNF2-rel_dom	SNF2-related domain	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000330	Domain	SNF2, N-terminal	Interproscan
IPR001368	Domain	TNFR/NGFR cysteine-rich region	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR006689	Family	Small GTPase superfamily, ARF/SAR type	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR025766	Domain	ADD domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR038718	Homologous_superfamily	SNF2-like, N-terminal domain superfamily	Interproscan
IPR044574	Family	ATPase ARIP4-like	Interproscan
IPR049730	Domain	SNF2/RAD5-like, C-terminal helicase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45797	RAD54-LIKE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0140658	Molecular Function	ATP-dependent chromatin remodeler activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-