| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CAI8034474.1 | SORTING AND ASSEMBLY MACHINERY SAMM50 PROTEIN FAMILY MEMBER | contig_4227_pilon | 3133 | 6117 | + |
| CDS | |||||
| CAI8034474.1 | |||||
| Transcript |
| - |
| Protein |
| CAI8034474.1 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01103 | Omp85 | Omp85 superfamily domain | Domain | Interproscan |
| PF03938 | OmpH | Outer membrane protein (OmpH-like) | Domain | Interproscan |
| PF07244 | POTRA | Surface antigen variable number repeat | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000184 | Domain | Bacterial surface antigen (D15) | Interproscan |
| IPR005632 | Family | Chaperone protein Skp | Interproscan |
| IPR010827 | Domain | POTRA domain, BamA/TamA-like | Interproscan |
| IPR023707 | Family | Outer membrane protein assembly factor BamA | Interproscan |
| IPR024930 | Homologous_superfamily | Skp domain superfamily | Interproscan |
| IPR034746 | Domain | POTRA domain | Interproscan |
| IPR039910 | Family | Surface antigen D15-like | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12815 | SORTING AND ASSEMBLY MACHINERY SAMM50 PROTEIN FAMILY MEMBER | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0019867 | Cellular Component | outer membrane | Interproscan |
| GO:0051082 | Molecular Function | unfolded protein binding | Interproscan |
| GO:0071709 | Biological Process | membrane assembly | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| - | - | - | - | - | - |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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