| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CAI8017034.1 | TRNA 5-METHYLAMINOMETHYL-2-THIOURIDYLATE -METHYLTRANSFERASE | contig_16196_pilon | 20974 | 23225 | - |
| CDS | |||||
| CAI8017034.1 | |||||
| Transcript |
| - |
| Protein |
| CAI8017034.1 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01351 | RNase_HII | Ribonuclease HII | Family | Interproscan |
| PF03054 | tRNA_Me_trans | tRNA methyl transferase HUP domain | Domain | Interproscan |
| PF12867 | DinB_2 | DinB superfamily | Domain | Interproscan |
| PF20258 | tRNA_Me_trans_C | Aminomethyltransferase beta-barrel domain | Domain | Interproscan |
| PF20259 | tRNA_Me_trans_M | tRNA methyl transferase PRC-barrel domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR004506 | Family | tRNA-specific 2-thiouridylase | Interproscan |
| IPR012337 | Homologous_superfamily | Ribonuclease H-like superfamily | Interproscan |
| IPR014729 | Homologous_superfamily | Rossmann-like alpha/beta/alpha sandwich fold | Interproscan |
| IPR022898 | Family | Ribonuclease HII | Interproscan |
| IPR023382 | Homologous_superfamily | tRNA-specific 2-thiouridylase MnmA-like, central domain superfamily | Interproscan |
| IPR024567 | Domain | Ribonuclease HII/HIII domain | Interproscan |
| IPR024775 | Domain | DinB-like domain | Interproscan |
| IPR034660 | Homologous_superfamily | DinB/YfiT-like putative metalloenzymes | Interproscan |
| IPR036397 | Homologous_superfamily | Ribonuclease H superfamily | Interproscan |
| IPR046884 | Domain | tRNA-specific 2-thiouridylase MnmA-like, central domain | Interproscan |
| IPR046885 | Domain | tRNA-specific 2-thiouridylase MnmA-like, C-terminal domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11933 | TRNA 5-METHYLAMINOMETHYL-2-THIOURIDYLATE -METHYLTRANSFERASE | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0002143 | Biological Process | tRNA wobble position uridine thiolation | Interproscan |
| GO:0003676 | Molecular Function | nucleic acid binding | Interproscan |
| GO:0004523 | Molecular Function | RNA-DNA hybrid ribonuclease activity | Interproscan |
| GO:0008033 | Biological Process | tRNA processing | Interproscan |
| GO:0016740 | Molecular Function | transferase activity | Interproscan |
| GO:0016783 | Molecular Function | sulfurtransferase activity | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| - | - | - | - | - | - |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-Yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
© 2024 All Rights Reserved.
