| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CAI8000336.1 | CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 | contig_11420_pilon | 44391 | 47042 | + |
| CDS | |||||
| CAI8000336.1 | |||||
| Transcript |
| - |
| Protein |
| CAI8000336.1 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00533 | BRCT | BRCA1 C Terminus (BRCT) domain | Family | Interproscan |
| PF01653 | DNA_ligase_aden | NAD-dependent DNA ligase adenylation domain | Domain | Interproscan |
| PF03119 | DNA_ligase_ZBD | NAD-dependent DNA ligase C4 zinc finger domain | Domain | Interproscan |
| PF03120 | DNA_ligase_OB | NAD-dependent DNA ligase OB-fold domain | Domain | Interproscan |
| PF12826 | HHH_2 | Helix-hairpin-helix motif | Motif | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001357 | Domain | BRCT domain | Interproscan |
| IPR001679 | Family | NAD-dependent DNA ligase | Interproscan |
| IPR003583 | Domain | Helix-hairpin-helix DNA-binding motif, class 1 | Interproscan |
| IPR004149 | Domain | Zinc-finger, NAD-dependent DNA ligase C4-type | Interproscan |
| IPR004150 | Domain | NAD-dependent DNA ligase, OB-fold | Interproscan |
| IPR010994 | Homologous_superfamily | RuvA domain 2-like | Interproscan |
| IPR012340 | Homologous_superfamily | Nucleic acid-binding, OB-fold | Interproscan |
| IPR013839 | Domain | NAD-dependent DNA ligase, adenylation | Interproscan |
| IPR013840 | Domain | NAD-dependent DNA ligase, N-terminal | Interproscan |
| IPR018239 | Active_site | NAD-dependent DNA ligase, active site | Interproscan |
| IPR036420 | Homologous_superfamily | BRCT domain superfamily | Interproscan |
| IPR041663 | Domain | DisA/LigA, helix-hairpin-helix motif | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR23389 | CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0003677 | Molecular Function | DNA binding | Interproscan |
| GO:0003911 | Molecular Function | DNA ligase (NAD+) activity | Interproscan |
| GO:0005829 | Cellular Component | cytosol | Interproscan |
| GO:0006260 | Biological Process | DNA replication | Interproscan |
| GO:0006281 | Biological Process | DNA repair | Interproscan |
| GO:0006288 | Biological Process | base-excision repair, DNA ligation | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| - | - | - | - | - | - |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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