Gene detail

Detailed information of Bpl_scaf_9639-3.10 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_9639-3.10	HIGH-AFFINITY CHOLINE TRANSPORTER 1	Bpl_scaf_9639	323496	344382	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_9639-3.10

ATCAAAACCAACATTATAATAAGCATTTCAACGCATATAATGCAAACAATCTGCTTCTCTCTTGTCTTCATTTCGAGTTTTTAGCGGTTTACCTCTGACATTTAATATTCCTTCAACTGACAACCTACGTGTAAATATTTATTACCCCCAGTTATGTGAACTCTCGGTTAAATCACGCGTGACTTGAGTTAAAGCGCTTGATTGATTATTGATTCCGGGTCGATAGACGCTTTATTGAAAGTAGAGTATTGTGAAGACACCTTTATTTTCACATAATTCTCAACAAAAAAGTTTAAGAAAACCCCATAATATTCCAATGCTTTAATAAGTAAAATTGACATATCGAATTGTATGTACATATAACTATAATTCGGAGACCGTCATCTCAGGTAGTTTGTTTCTCAGTCAACCATATACCTATGTCATTCATAAAGAAGCCAAGTGAACAACATTCAACATATTTATACATTACCAAGTGAAAATGGCAGTCAACATACCAGGGCTTATTTCAGTTATAGTTTTTTATATTTTGATTCTAGCTATTGGAATATGGGCGGCCAGAAAAACAAAAAAGGCTAATAATGAAGATTTGATGTTAGCTGGAAGGGACATTGGGGCGTTTGTTGGTGTGTTTACTATGACAGCAACGTGGGTTGGAGGAGGATTTATAAATGGTACGTCTGAAGCTATTTATAGTTCTGGTTTTGTGTGGTGTCAAGCTCCATTTGGATATGCGGCTAGTTTATGGTTTGGAGGTTACTTTTTTGCAAAGCGAATGAGGTCACAAGGTTATGTTACAATGCTCGATCCTTTACAACAGAAATACGGTGATCGTATGGGAGGATTGCTTTATCTTCCTCCATTAATGGGAGAAATTTTCTGGTCGGCAGCCATTTTGGGTGCTCTGGGAACCACACTATCAGTCATAATCGATCTCCATTACAATATTGCTGTAATCGTATCAGCATGTATAGCTGTGTTCTACACTTTGATTGGTGGACTATATTCTGTAGCCTATACAGATGTTGTACAGCTGATATGCATTTTCTTTGGACTGTGGTTATCAATTCCATTCGCTATGACACATGATGCTGTGACGGATATATCAGTTAATTATACCACAGTGTGGATAAAAGAACTAGAACCTAAATATTCTGGTGTATATATTGATTCGTTCTTGCTTTTAATTTTTGGAGGAATAGGATGGCAGGTGTATTTCCAACGGGTTTTGTCAGCAAGAACAACAAGGATTGCAGAAATGTTATCTTACTTTGCTGGATTTGGTTGTCTGTTTTTGACAATACCGCCACTGCTGATTGGGGCCATTGCTACACAAACAAATTGGAATGAAACGGACTACGCTAAGGCCACATCATATGCACTTCCGGAAGGTGATGCTAGATTTGTTCTACCATTGGTCTTGCAGTATTTATGTCCAACTGCTGTATCATTCTTTGGCTTAGGAGCAGTGGCGGCAGCAGTGATGTCATCTGCAGATTCCTCTGTTTTATCTGCCAGTGGAATGTTTTCAAGAAATATTTACAGAGCAATTTTTCGTCAAAATGCTTCAGATGTGGAATTGACATGGGTGATGCGAATTGCCATATTTGGCGTTGGAGCTTTAGCAACAGTAATAGCAGTGACAGTTGGGTCTATTTACGAGTTATGGTTCTTGTGCTCAGATTTCGTATACGTCATGTTATTTCCACAATTAACGTGCGTCGTGTACTTTAATGGAACAAACACATACGGGTCTTTAGTTGGATTTTTCGTCGGTCTTTTCTTCCGGTTGGCAGGAGGTGATTTGCTGATGGATATTACACCAATAATAAAATATCCATGGTATATACCTACCTCAAAGGAGCAACTTTTTCCATTCAAAACGTTTGCAATGATACTAACTTTTATTTTCATATTTTTGGTGTCGTATGCAACAAACTATATTTTTAAGCACGGTTGGTTACCAAAGCATTGTGATGTATTTCAATGTATAGTTAATTTACCAAAAGAAAAACCGAAAACAATATTTCACCCGACACAGGAACATGAGGTCCAAACGTCCAGTAAGGAAACGATATCAACAATGGTGGATCCGATTAACGGGGAGTTGCCACCTTATTATTCCAATGATTCTATACAGACAAAGTTATAGACTGTGAGAAGATAACCACACCGCCACGAAATGTACTGCTACAATGTTTAATTATATTAATATGAACTGTCATTGGCCAGTATAGAAAAACATTAACACATGTAACCAACGTGTATATTACAGAAATCCTA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00474	SSF	Sodium:solute symporter family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001734	Family	Sodium/solute symporter	Interproscan
IPR038377	Homologous_superfamily	Sodium/glucose symporter superfamily	Interproscan
IPR052244	Family	High-affinity choline transporter	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45897	HIGH-AFFINITY CHOLINE TRANSPORTER 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005307	Molecular Function	choline:sodium symporter activity	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0008292	Biological Process	acetylcholine biosynthetic process	Interproscan
GO:0015871	Biological Process	choline transport	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0022857	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14387	SLC5A7, CHT1; solute carrier family 5 (high affinity choline transporter), member 7	-	Cholinergic synapse	ko04725	PMID: 28812709
K14387		-	Choline metabolism in cancer	ko05231	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_9639-3.10 global RNA-seq network