Gene detail

Detailed information of Bpl_scaf_9316-3.10 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_9316-3.10	EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H	Bpl_scaf_9316	341091	352849	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_9316-3.10

ATGACTGGGTTTCGAAATAACCAAACATTAGGTGCCGATATTGCTAGCAGTCTATTGAAAAAATGTCATTGGTATCACCAAGGAAGGAAAGAAGGAAGAAATGGTGGTCAGAGAAAAATAAATCAAGGGCTACAGTTAGGGAAGAACAAAGGAGGATTTAAGCCGTCAGATCATACCAAAAAAGTGTTGTCGTCTTCTTCTAATATTAGTGAAATTCGTACAACAAGGGCTACAACTGAACACCGTAACCATGCAAAGTCAACAAGCGAAAATCGTAACCATGCCAAAACAAAGGATAAAAATCAGGCAAAAGTTAAAAACAGTTCCAAAAATGACAAAGTTAAAATTGAGACAAGCAAGAAGAAAAGTGAAACAAATTCAAAGTCAAAAAGTGAAAATTCTCCTGAAGAGAAAAAGACATTAGAAACTAAATATGTATTATTTATTGGTAATTTGCCTTACAGCGTAACAAAGGAAAATTTAGAAGAACATTTTAGGAAAACAGGTGGAGTAAAAAAGATAAGAATACCTCAAGATAGAGCAAAGCAATGTTCTAGAGGCTTTGCATACATAGAATTTAAGGACAGAATCAGTCATGGTATTGCCTTGCGACTTCACCATACAACCTTAGGAGGTCGAAAGATCAATGTCGAATTCACGTCAATTGGCGGAAAAAATGAGAAAAGGACAGACAAATTAAAACAGAAAAATGAGGCTTTAGCCAAGTTTAAAATGCCACTAGATTCATAGTGTCTTTATTGGATTAGATAACATAGCAGCTACCTGTTACATTCTGTTTTATATTAATTCATTGTTAAGACAGGGTACATGGTAATATTTATTTACCTTCAACTTCATTGTAAAGTTGAATGTACAAAGAAATCAGAGTTAAAGGAAATTTATTTGTGTGTTTAATGAAGAGAACACAGTTGGATATTTTATATGTTAATGAAGAGACAGGCAGAATTTGTTTCTAGATAACATTTTGTGTAGGTAAAGGGACGGGAAAGGTTCATATGTCATTATTTGTGTGGATGAAGGGGTGGGACTGGTTCATGCCAATCATGGATCATTTTTGTGTAGTTAAAGGGACAGGGTTTATTCATTGTTTGTGTGTTTGAAGGGATATGACTGGTTCATGGATCATTTTTTTGTATAGGCGAAGGGACAGGGCTGGTTCATAGATCATTTTTTGTGTGTTTGAAATAATAGGGCTTGTTCATGGATCTTTTTTTGTGTAGATCCAGGGACGGGACTGGATCATGGATAATTTTTTGTGTAGATGAAAGGACGGCTGGTTCATAGATCATGTTTTGTGTAGACGAAGGGATAGGACCTGTTCATGGATTATTTTGTGTAGTTGAAGGGGCTAAACTGGTTCATGGATTATTTTTGTGTAGATGAAGAGAAGGGACTGGTTCATGGATTATTTTTGTGTAGATGAAGGGATGGTTCATGACATCACTTTGTGTGTAGATCAAGGGGAGGGACTGGTTCATGGAAACACTATGTTCCTAGATGAAGGGCTGGGACTGTTATGAAATCACATTTTTGTGTAGATGAAGGCACTGGATTGGTTCATACAATCACTCTTTGTGTAGATGAAGTGACAACACTTGTTCATAAAATCACATTGTGTATTAATGAAGGTGTGGTGGGACTGGTTCACTGATCAATGTAGATGAAGTGACAGGACTGGTCCATTGGTCTTTTTATGTGTAGGTGAAAGGGAAAGGGACAGTTCTTGATATTACAACTGTGGAATAAATCCCAAATCAGGCTTCAAAGATTAAAAAAAAAAACATAATATTGTACACTTCATTACAATGTTTGTGAATTTTAAGAGAGAGAATCATTATTAGAGATTGGTGCTATTGTTTACATGTATTTTTTTCTATGTCCTTTTGTAGTAATCTAATTACAATGCAATTTTATTTTAGTTAGATTTTCATCTACCTATTGTATCAGTGTATATAGTCTCTAACGTTTGTAAGTTTATCTTCCTCCCATGGCATGGTGCACTAGAAATTGTACAATATAAGATTGAGTTTGTTATCGACTTACAGGCAGTGCATAGTTTTCTATTTACTCCACAAAATAAACGACCATACTTACAGGCAGTTCATGGTTTTCTATTTACTCCACGAAATAAACGGCCATGATATATTTTTGTTGAAAATTACGTTGAATATTCATCATCCCATGATATGTAATAGTTTTCAGTGATATGAACATGGCTTGTACAATGATCCACTTTTATTGATGGATTTTAATCAAATTGGATAAAATAGATATTAAACATTGATTTGGTGAGAGCTTAATGTTTGAAAATTAACATATTTTGTTACAACTAAACCATCATAATATTTCAGTCTTCACGCTAACCCACTTGTCCGAAGCCCAGGACAAGTAAAACTGGATTCGGACAAGTGAAAATTATGAAAGAATAGAATAAGAATAAGAATATTTATTATTCCAATCAATGGGCCCACAATATGGGCAAACAAATTGCATACATTGATTATTGTCATTGGAGGCAATTATACACACATATATATATAAATACAATGTTTCTTGTCGGGTTCAGAGCCTTACAATTTTTTTTTAATTAATAATATAAACAGACAGAGAAAAAATATTTCAGTATCATAAACCCTGTTTCAGTTTTCTTGTCTCAAGGCACTCTATTATATATTTTCCAAAAATATTGATTATTGAACGATCTTCATTGGTAAATAAATAATAGAATTAATCAGAATATGTTTGAATAAATACAAATGTAGAAAATAAATAATAGAATTAATAAAGAATATGTATGAATAAATACAAAATTTTCTAAGTTTGGCTTTCAGGCCAGTGGGTGAAAAAAATTAAGGAAAAGACTGATATTTATTGTAAAATCATGTTAATACATTTGTATGTCATTATTTTACTGAAATTTCAACCACATGTGTCTTTTTATATGATGTTTTAGTTGTATTATGTTATGTGTCTGCTGTTGTTTTCATTGTTGCTTTTGTCTGTCTATAGACACAATGGTTTCCATGCAAAAACTTCTGTTCTGTTTCTTTAATCCTAGAATTTCAACACAATTATCCTTTGCACAGAATAAAAGTTAGGTTTGATATTGGGTATTCTACCCTAACCTGTTTCCAAACAAGAGGCACCCAAGATGCCAAAAAAAGGCTACCTCTTTTGTTCTTGTTCTACAACTAATGAAAAGAAACGAAGTTTAATCAGTCAAAGACCTCATCATTGGCTTATAGTAACAGCCATATTATAATCACCAGAAACTTTTGTGGTGATGAAAATGCTATAAAAGACTATGTCCTTTTTTCTGTTTCTAATGAAAAGAAACTAGGTTTAATTGTTCAAATATCTCATTTGCTTATAGTACAGCAAAACAACCATATTGTAATTTTTGAGTCTTTTTTTGTTGTTGATGAAAATGTTAAAGTCATACTTTATAGATAGTTACTGACTGAAGTGTAATGGTTAGTGTGCTCACCTCTAGTGTGGTAGACCATGGGTTCAAATCCATCAGGTCAAACCAAAAACTGAAATATTGGTGTTGATTTTCCACGAAGCAAGCAGCATTAAGTTGTATGAATGAAGACTGATTGTTTCAAAGTCTGGATAATGTGTCCGAGTGGAATGACATGGCTTACATGTGGAATATTGTTTTATTGATCTAGCATTATAAAAATCCAACAAAGTGTCGTTTTTAGTACAAAGCAGACATCATCAACATCATCCCATAAATCTATTATTTAAGTTTTAATTTGGTGCAGAATTGTTTTATTTTAACTCGCCCGACACAAAGGGTCATGTGATGTTAGACATGTCAGAGCCTCGTTTGCAGTAAGCTTGGCTATGAGTCGGCAATGTAAATATCGGTATTTTTGTAATTCGATTTCTGAGTTATGTTCATCTATTTCCGTACGAAAACAAATTAAAACAATCAAATAATATCTTGCAAGTAAATATATTCCCGGGAAATTCCTGGTAGCGTAGTTCTAGGTTCGAAATTGGCATTCAAATTTGAACACTGAAGTTCTTTTCAAAGAAATATGGAGGTCGCCATTTTGAACAGCTGAACGGTCACGTTATTAATTTTTTCTTTTACCTCTAAATTAAAGAGCCCTGAACATGCGCATGGCACAATTTGATAGAAAATGGATGCATCAGCAGAAGCAAACAGGTTGCAGTCTATATTTTGAAAATTTTGGTTGAACATTTTCATAGCCAAATACTAATAGGGACATATTCAGACCAATGTTTTATATATTTCTTTAGCTTTGGCATAAAATGGCATATGTGTTTTTGATAGAAGACACATTTTTCTACCTTTTAATGTCCGAATGGACCAAGCATTGTTTGGCGCTAACGAGCGCGGTCACACGTTTTGGAAGTGGTACCACACAATTCCATTGAATTTTTTTTTCAATTACCTCCCCTTTGTGACTTCCGGTTTCTTTTGCTGGAGAGTTTCGACAAATAAACGAAGTAGTAGTTCTTAGTGTTGTTTATTACTGCTCAGAGTGCTTAATAATGAAATGAAATAGTCTAATAGACCTGCCCAAACTTGTAAAATGTTGCATTGCATCTTCAATTGTTTTTGACAAAAAAAAGGGGGGGG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR034228	Domain	Nop6, RNA recognition motif	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23236	EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005730	Cellular Component	nucleolus	Interproscan
GO:0019843	Molecular Function	rRNA binding	Interproscan
GO:0042274	Biological Process	ribosomal small subunit biogenesis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14789	NOP6; nucleolar protein 6	-	Ribosome biogenesis	ko03009	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_9316-3.10 global RNA-seq network