Gene detail

Detailed information of Bpl_scaf_7496-1.20 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_7496-1.20	UBIQUITIN LIGASE PROTEIN CHFR	Bpl_scaf_7496	267507	297398	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_7496-1.20

ATGTTAACTCCTACAGCCAATCAGGGATACGATGCAGATGAAGACGATGAGGAAGAATACACAGACTCTGATGAACATGAAGATAATCCATCTGTTGAAGATCGTAGATTGGGAATACCTCCAGCAGTACCAGCATTTGTTCCTCCTGTAACACCAGCACCAACACTGTTTGGATTTGGTGCTCCTTTGTTTGGCACATGGCAGTCAACCACTAAATGTAGACAATGTCCTGGTTACGTACCTCCACCAACATTACCTGCCACTGGCATCATTCAAACAGCATTCAATGCAGTAGGTACAGCACTAGGAATAAACAAAGGAGGAAATGCTGATCCTACTTCAACGAAAAAAGATGATACGGGAAAGGCTACAACAGCGGAAGGTGAAAGGGTGAACGAAGATGGAGCAGGACCCTCAACTACAGATGATAAGGAAAAAGAAGTCGACCCTGAATTAAAGGATGAGAAAGTGATGCCTAAACCTCCAAACTTTGTGTGTGCATTATTTAATCAGAATCATGTTCTGTGTCAGTGTTGTTTACAGCCCATGCCAGACAGACGTGCCCTGTATATGAATGCTAGTGAGGACAAGCATTCATCGACAGTAAGCCACAAAACAGCGGAATCTGAGAAAATGGCTCCACCAAAAAAATCGTCAGGCTCAAGGTCTGGTAAGGCTAAAAAAGACGATTTAAAAGCCCTAGAGGACAAATGGGAAAGTCGCTTCACAGGGTTTGAATCTAAAATGACACAATTAATGGAGATTTTTAGCTCGCATGAAAATGTGTTGTCACAAAAGGAAACTGTCACCGAGGGTGAGCAGAAAGCTAATAGTGACAATAACTGTATGAATAATGACTCTTCGGGAGTGCATAGAACAGAATACAGTGACAATGAAAATGACAATTTTGCTGTTGAGCAGGATAGTAATTGTCAAAATGATTTACCACTGTCTTTAGCTCCAGGTCAGTCTGAGAGACGTGAGTTAGGTTGTTTAGATGAGGAACAGTGTTCAAGTGTCAGTCATATAGATTTGAACAATAATGTGAAATCTAATAGATTTAGACAATATTTGAAAGTTTCTTCAAATGACAATAGTGAAGAAAAGTCGACTTCAAATAATTTAGTCAATCTGTTCGGTGAAGACGCAAAAGCTAAGTGTGCTTCAGAATCAGTTGGTATTGTTTTAGATAGTAGCCAAATTGACATTTTAGGTACTTCTTGGCATACGGAAACTCCGGGTAAACTAACCGCATATAAAGATGAATATAAATCTTGTTTTACAGTTCATGATAAATCATTGGAACATTTACAAGTACCAAGTTTTGATAATATGGTGCCAGTTTTGTTACAGAAAAAACATGGTAATAAAGCTTTATCTTCCACTGGGAAAAAGTACTCTCTACATACACCTTTTATTAAAGGTATTGAGAAATTAGCTTTTCAAGGACAAGTTGCATCATGTATGGGAATAATCGCAGCAGCGTATACTCAACAAGCTTTGGGTACTTTACTGGAAACACTTCAGCAGAAAGATGTTAATCTAGACAAAAGTGTTCAATTAGTTAGGGACATTTTTGCCATGTCGACTAAGACTTTGGATCAGGTGGCAAAATGTGGCGCTTTTCATCATCTAGTGTGTAGGAAAGCAACTATGGAAGATGCTGGTTTGGTAGGAATTAAAGACTTGAGTCTTCAGTTATTTAATTTGCCCTTATCAGAAACTGGTGTGTTTGGGAAAAATCTTGAACAAACACTTAAAGATAGAACTGAACAAAGTAAACAACTTAAAGATTTGTTGCCTGAATTGTACACCACAGTTCAAAATAAATCTTCAAATTTGAAGAGAAGTAACAATTCAAATAATTCTTCAAATGACTGGCAGTCAAAGAAACTTAGATTGGACACGCCAAGTGATTATTTTAAGAACAATAACTATACTATTCCTAAACGTAAGCCAGCTGAGACCAAGTCGTATAGTGCTGACAAATATGAGAAAATTTTCGTGGCAGAGGGAAGCAGAAAAAATGACAAAGTGGTAAGCATGGTCAAATGTCAGTTTCCGGAGATACCGGTTGGGGGTCGTCTGAGTCTATTTTACAAAGAGTGGAAAAAAAGAACGGACGACAATTGGGTTTTATCAATAATAAAAGAAGGTTGCAAATTGGAATTTCAAGCAAAACCTCCAAAAACAGGAGTGAAACAAACGTTTGCTCCTGCAAAAAGTTTAGATATTTTAAATACAGAAAATTATATAGAGTCTAAAGGAATCACTGTTAAACAGGTCTTAAGAGATTCATTAATTAACTTAGATGCAGGGAAATATACATGTCCAGATAAAGGAAAAATTAATGTTAATTCAGCCATGTGTTACACCTGTGGATTGAGAAATTTTAAAGAATTAGCATACCAATATAGAAGAGACATTCCTAAGGAAGATTTTCCAGTCAATTCTGACCACAAATAG

Transcript

Bpl_scaf_7496-1.20

AAGAAAAGACCAGAAGAAGACTTAAAAGAATTGGATGCCAAGAACAAAATAACTAAAGATATGTTAACTCCTACAGCCAATCAGGGATACGATGCAGATGAAGACGATGAGGAAGAATACACAGACTCTGATGAACATGAAGATAATCCATCTGTTGAAGATCGTAGATTGGGAATACCTCCAGCAGTACCAGCATTTGTTCCTCCTGTAACACCAGCACCAACACTGTTTGGATTTGGTGCTCCTTTGTTTGGCACATGGCAGTCAACCACTAAATGTAGACAATGTCCTGGTTACGTACCTCCACCAACATTACCTGCCACTGGCATCATTCAAACAGCATTCAATGCAGTAGGTACAGCACTAGGAATAAACAAAGGAGGAAATGCTGATCCTACTTCAACGAAAAAAGATGATACGGGAAAGGCTACAACAGCGGAAGGTGAAAGGGTGAACGAAGATGGAGCAGGACCCTCAACTACAGATGATAAGGAAAAAGAAGTCGACCCTGAATTAAAGGATGAGAAAGTGATGCCTAAACCTCCAAACTTTGTGTGTGCATTATTTAATCAGAATCATGTTCTGTGTCAGTGTTGTTTACAGCCCATGCCAGACAGACGTGCCCTGTATATGAATGCTAGTGAGGACAAGCATTCATCGACAGTAAGCCACAAAACAGCGGAATCTGAGAAAATGGCTCCACCAAAAAAATCGTCAGGCTCAAGGTCTGGTAAGGCTAAAAAAGACGATTTAAAAGCCCTAGAGGACAAATGGGAAAGTCGCTTCACAGGGTTTGAATCTAAAATGACACAATTAATGGAGATTTTTAGCTCGCATGAAAATGTGTTGTCACAAAAGGAAACTGTCACCGAGGGTGAGCAGAAAGCTAATAGTGACAATAACTGTATGAATAATGACTCTTCGGGAGTGCATAGAACAGAATACAGTGACAATGAAAATGACAATTTTGCTGTTGAGCAGGATAGTAATTGTCAAAATGATTTACCACTGTCTTTAGCTCCAGGTCAGTCTGAGAGACGTGAGTTAGGTTGTTTAGATGAGGAACAGTGTTCAAGTGTCAGTCATATAGATTTGAACAATAATGTGAAATCTAATAGATTTAGACAATATTTGAAAGTTTCTTCAAATGACAATAGTGAAGAAAAGTCGACTTCAAATAATTTAGTCAATCTGTTCGGTGAAGACGCAAAAGCTAAGTGTGCTTCAGAATCAGTTGGTATTGTTTTAGATAGTAGCCAAATTGACATTTTAGGTACTTCTTGGCATACGGAAACTCCGGGTAAACTAACCGCATATAAAGATGAATATAAATCTTGTTTTACAGTTCATGATAAATCATTGGAACATTTACAAGTACCAAGTTTTGATAATATGGTGCCAGTTTTGTTACAGAAAAAACATGGTAATAAAGCTTTATCTTCCACTGGGAAAAAGTACTCTCTACATACACCTTTTATTAAAGGTATTGAGAAATTAGCTTTTCAAGGACAAGTTGCATCATGTATGGGAATAATCGCAGCAGCGTATACTCAACAAGCTTTGGGTACTTTACTGGAAACACTTCAGCAGAAAGATGTTAATCTAGACAAAAGTGTTCAATTAGTTAGGGACATTTTTGCCATGTCGACTAAGACTTTGGATCAGGTGGCAAAATGTGGCGCTTTTCATCATCTAGTGTGTAGGAAAGCAACTATGGAAGATGCTGGTTTGGTAGGAATTAAAGACTTGAGTCTTCAGTTATTTAATTTGCCCTTATCAGAAACTGGTGTGTTTGGGAAAAATCTTGAACAAACACTTAAAGATAGAACTGAACAAAGTAAACAACTTAAAGATTTGTTGCCTGAATTGTACACCACAGTTCAAAATAAATCTTCAAATTTGAAGAGAAGTAACAATTCAAATAATTCTTCAAATGACTGGCAGTCAAAGAAACTTAGATTGGACACGCCAAGTGATTATTTTAAGAACAATAACTATACTATTCCTAAACGTAAGCCAGCTGAGACCAAGTCGTATAGTGCTGACAAATATGAGAAAATTTTCGTGGCAGAGGGAAGCAGAAAAAATGACAAAGTGGTAAGCATGGTCAAATGTCAGTTTCCGGAGATACCGGTTGGGGGTCGTCTGAGTCTATTTTACAAAGAGTGGAAAAAAAGAACGGACGACAATTGGGTTTTATCAATAATAAAAGAAGGTTGCAAATTGGAATTTCAAGCAAAACCTCCAAAAACAGGAGTGAAACAAACGTTTGCTCCTGCAAAAAGTTTAGATATTTTAAATACAGAAAATTATATAGAGTCTAAAGGAATCACTGTTAAACAGGTCTTAAGAGATTCATTAATTAACTTAGATGCAGGGAAATATACATGTCCAGATAAAGGAAAAATTAATGTTAATTCAGCCATGTGTTACACCTGTGGATTGAGAAATTTTAAAGAATTAGCATACCAATATAGAAGAGACATTCCTAAGGAAGATTTTCCAGTCAATTCTGACCACAAATAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17979	zf-CRD	Cysteine rich domain with multizinc binding regions	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR040909	Domain	E3 ubiquitin-protein ligase CHFR, cysteine rich domain with multizinc binding	Interproscan
IPR052256	Family	E3 ubiquitin-protein ligase CHFR	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16079	UBIQUITIN LIGASE PROTEIN CHFR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004842	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006511	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0007093	Biological Process	mitotic cell cycle checkpoint signaling	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for Bpl_scaf_7496-1.20 global RNA-seq network