Detailed information of Bpl_scaf_749-1.7 in Gigantidas platifrons Gene info
Gene IDAnnotationScaffoldStartEndStrand
Bpl_scaf_749-1.7COLLAGEN ALPHABpl_scaf_74975780113530-

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01391CollagenCollagen triple helix repeat (20 copies)RepeatInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR008160RepeatCollagen triple helix repeatInterproscan
IPR013320Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR050149FamilyCollagen superfamilyInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR24023COLLAGEN ALPHAInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0005594Cellular Componentcollagen type IX trimerInterproscan
GO:0005615Cellular Componentextracellular spaceInterproscan
GO:0030020Molecular Functionextracellular matrix structural constituent conferring tensile strengthInterproscan
GO:0030198Biological Processextracellular matrix organizationInterproscan
GO:0031012Cellular Componentextracellular matrixInterproscan
GO:0062023Cellular Componentcollagen-containing extracellular matrixInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K08131COL9A; collagen, type IX, alpha-PI3K-Akt signaling pathway ko04151PMID: 28812709
ECM-receptor interaction ko04512PMID: 28812709
Focal adhesion ko04510PMID: 28812709
Protein digestion and absorption ko04974PMID: 28812709
Human papillomavirus infection ko05165PMID: 28812709

Expression pattern
 1. Expression trend for Bpl_scaf_749-1.7 global RNA-seq network
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