Gene detail

Detailed information of Bpl_scaf_7488-4.17 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_7488-4.17	PEROXISOMAL MEMBRANE PROTEIN PMP34-RELATED	Bpl_scaf_7488	416757	436397	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_7488-4.17

ATCCCCTGTTCGTAGTGGGTACATACATCTAGTGATAAACCTAATATTTGACCTCTGGGTCATTTTTCTGTTCATTGGAAAAAACGTTAGATACAAATGACATCTTTATCCAAACCTGACATAGCCGTAAACACAATGACTGCCAGTGCCACCCTGCAGAAGTTGTTTACATTTCCCAATCTCGTACATGCTGTGGCAGGTGCTACTGGTAGTGTTTTTGCCATGTTTGTATTTTATCCACTGGATACAGCTAGAACTAGATTACAGGTTGATGATAAAAGAAAAGCAAAACATTCACCAGTAGTAATGGCAGAAATTGCTAAAGAGGAAGGCTTATTATCGTTGTACAGAGGGTTATTTCCAGTACTGGTAACCTTGTGTTGTTCCAATTTTGTCTATTTCTATACATATAATGGATTAAAAACTGTGTACCTTGGAGAGATGGAAAAGGCAGCCCCTATCAAAGATCTCACATTTGCATTTATTGCAGGAGTTATTAATGTATTAGTGACCACACCATTGTGGGTTGTAAATACAAGGCTGAAGTTACAGGGTGCTAACTTCCACACAGATGAACATAAAGAAGCTAAAGTTCCCAGGTATAGGGGAATATTAGATGGATTGTGGAAGATTGCCAGATTTGAAGGACTTCCATCATTATGGAATGGAACTTTACCATCCCTTGTCTTAGCTTCTAATCCATCAGTACAGTTTATGGTCTATGAAACAATCAAGCGTTACTTTCAATCTATTCTCAAGACAAAGGAACTGAGTGGATTTCTGTATTTTATCATTGGTGCCATAGCCAAAACAGTAGCAACAGTTGTTACATACCCATTACAGGTTGTACAGTCTAAATCAAGGTCAGGATTTCACAAGAAGTCAGAAAGGCAAGGAATCATACAAAATCTTATTGATCTTGTCAAACATAATGGTATATCATCTCTATATAAAGGATTAGAAGCCAAGTTAATACAGACAGTCCTTACAGCAGCTCTAATGTTCCTAACATACGAAAAGATTGCAGCCTTTATATTTAGAACAATGGGTCATGAGGTCAATAAAGGAAGATGAAAATAGCTTTAATACCAATAAGAATTAGATATTAAAATGGTGCTTCTTGATAATTCAGCATGTGTTCTTTAAGTATCACAATATTTTAATACTGTATTTACAGCAGTAGATATGTTTTTTATTTTTTTAAATTATGTAATGTGATAGCCAAGAATGTTATGCATATAATCAAGATATACATGTACAGTAGAACTTGTGCAATCTGATATCTGAGTTTTCTGACATCCTGTGACATCCGACAAAAATTTATCGTCCCAAAGTATTTCTGTTAGCTAAAATAAAAGCTGAGTATTCCGACATCCTGTACAATTTGACACATTTCCCCGGTCCCTTGGTGTGTCGGATTAGACAGGTTCTGACATCCTGTACAATATGACACATTTCCCCGGTCCCTTGGTGTGTCGGATTAGACAGGTTCTGACATCCTGTACAATTTGACACATTTCCCCTGTCCCTTGGTGTGTCGGATTAGACAGGTTCTGACATCCTGTACAATTTGACACATTTCCCCGGTCCCTTGGTGTGTTGGATTAGACAGGTTCCACTGTATTAGTTTTAAATGTCTGAAAATATATTTATTTTTTAAAAATAAATTTTGGTTGTGAGTTTGTTATTGTAATAAATAAGCATTTGTCAAATATATAGAAAATATAATTTAAAGCAGAGGCAAAGAGTGGATACTTTGTTGTCATGAAACAAACTTATAAACATTCCATCTATTTTTATTTTTACTTTGTTAGTGTACAACTTTTCAGCTGTACATGTATTCTTATGCAATTAGAATTTTGTTTCTTAATTATCTATTTATCTGGGTTAGAGTTAGGATGATGGTGTTTAACGCCACTTTCAACAATATTTCAGTTATATCGTGGCTGTCAAGTTTTATTGGTGGAGAGAACGGGGGAGAAAACCACCGACCTGTCACAAGTCACTGACAAACTTCGCCATTAGCGTCTAGTTATCTTTCCAATGACTATTTTGAAAATTTACGAAACAGAATTTTCTTTAAATTGCCATAACATCTGTGTTTTAACCTTGAATCAGCAGATTTTCAAATTGTAACTTCCTGATA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00153	Mito_carr	Mitochondrial carrier protein	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018108	Repeat	Mitochondrial substrate/solute carrier	Interproscan
IPR023395	Homologous_superfamily	Mitochondrial carrier domain superfamily	Interproscan
IPR052217	Family	Mitochondrial and Peroxisomal Carrier Protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45939	PEROXISOMAL MEMBRANE PROTEIN PMP34-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005347	Molecular Function	ATP transmembrane transporter activity	Interproscan
GO:0005779	Cellular Component	obsolete integral component of peroxisomal membrane	Interproscan
GO:0006810	Biological Process	transport	Interproscan
GO:0015217	Molecular Function	ADP transmembrane transporter activity	Interproscan
GO:0015228	Molecular Function	coenzyme A transmembrane transporter activity	Interproscan
GO:0015230	Molecular Function	FAD transmembrane transporter activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0044610	Molecular Function	FMN transmembrane transporter activity	Interproscan
GO:0051724	Molecular Function	NAD transmembrane transporter activity	Interproscan
GO:0080122	Molecular Function	AMP transmembrane transporter activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13354	SLC25A17, PMP34; solute carrier family 25 (peroxisomal adenine nucleotide transporter), member 17	-	Peroxisome	ko04146	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_7488-4.17 global RNA-seq network