Detailed information of Bpl_scaf_7488-0.4 in Gigantidas platifrons Gene info
Gene IDAnnotationScaffoldStartEndStrand
Bpl_scaf_7488-0.4DNA POLYMERASE TYPE-X FAMILY MEMBERBpl_scaf_74882842346165-

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF10391DNA_pol_lambd_fFingers domain of DNA polymerase lambdaDomainInterproscan
PF14716HHH_8Helix-hairpin-helix domainDomainInterproscan
PF14791DNA_pol_B_thumbDNA polymerase beta thumb FamilyInterproscan
PF14792DNA_pol_B_palmDNA polymerase beta palm DomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR002008FamilyDNA polymerase family X, beta-likeInterproscan
IPR002054DomainDNA-directed DNA polymerase XInterproscan
IPR003583DomainHelix-hairpin-helix DNA-binding motif, class 1Interproscan
IPR010996DomainDNA polymerase beta-like, N-terminal domainInterproscan
IPR018944DomainDNA polymerase lambda, fingers domainInterproscan
IPR019843Binding_siteDNA polymerase family X, binding siteInterproscan
IPR022312FamilyDNA polymerase family XInterproscan
IPR027421Homologous_superfamilyDNA polymerase lambda lyase domain superfamilyInterproscan
IPR028207DomainDNA polymerase beta, palm domainInterproscan
IPR029398DomainDNA polymerase beta, thumb domainInterproscan
IPR037160Homologous_superfamilyDNA polymerase, thumb domain superfamilyInterproscan
IPR043519Homologous_superfamilyNucleotidyltransferase superfamilyInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR11276DNA POLYMERASE TYPE-X FAMILY MEMBERInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0003887Molecular FunctionDNA-directed DNA polymerase activityInterproscan
GO:0006281Biological ProcessDNA repairInterproscan
GO:0006284Biological Processbase-excision repairInterproscan
GO:0006303Biological Processdouble-strand break repair via nonhomologous end joiningInterproscan
GO:0016779Molecular Functionnucleotidyltransferase activityInterproscan
GO:0034061Molecular FunctionDNA polymerase activityInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K02330POLB; DNA polymerase betaEC:2.7.7.7
EC:4.2.99.-
Base excision repair ko03410PMID: 28812709
Viral carcinogenesis ko05203PMID: 28812709
HTLV-I infection ko05166PMID: 28812709

Expression pattern
 1. Expression trend for Bpl_scaf_7488-0.4 global RNA-seq network
TOP