Detailed information of Bpl_scaf_6758-2.13 in Gigantidas platifrons Gene info
Gene IDAnnotationScaffoldStartEndStrand
Bpl_scaf_6758-2.13CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1PBpl_scaf_6758282311305461+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF06807Clp1Pre-mRNA cleavage complex II protein Clp1FamilyInterproscan
PF16573CLP1_NN-terminal beta-sandwich domain of polyadenylation factorFamilyInterproscan
PF16575CLP1_PmRNA cleavage and polyadenylation factor CLP1 P-loopDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR010655DomainPre-mRNA cleavage complex subunit Clp1, C-terminalInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR028606FamilyPolyribonucleotide 5-hydroxyl-kinase Clp1Interproscan
IPR032319DomainPolyribonucleotide 5'-hydroxyl-kinase Clp1, P-loop domainInterproscan
IPR032324DomainClp1, N-terminal beta-sandwich domainInterproscan
IPR038238Homologous_superfamilyClp1, C-terminal domain superfamilyInterproscan
IPR038239Homologous_superfamilyClp1, N-terminal beta-sandwich domain superfamilyInterproscan
IPR045116FamilyPolyribonucleotide 5-hydroxyl-kinase Clp1/Grc3Interproscan

PANTHER
PANTHER termDescriptionSource
PTHR12755CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1PInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005849Cellular ComponentmRNA cleavage factor complexInterproscan
GO:0006378Biological Processobsolete mRNA polyadenylationInterproscan
GO:0006388Biological ProcesstRNA splicing, via endonucleolytic cleavage and ligationInterproscan
GO:0006396Biological ProcessRNA processingInterproscan
GO:0031124Biological ProcessmRNA 3'-end processingInterproscan
GO:0051731Molecular Functionpolynucleotide 5'-hydroxyl-kinase activityInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K14399CLP1, HERB; polyribonucleotide 5'-hydroxyl-kinaseEC:2.7.1.78
mRNA surveillance pathway ko03015PMID: 28812709

Expression pattern
 1. Expression trend for Bpl_scaf_6758-2.13 global RNA-seq network
TOP