Gene detail

Detailed information of Bpl_scaf_65581-1.6 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_65581-1.6	LEO1 PROTEIN	Bpl_scaf_65581	85727	126971	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_65581-1.6

ATGGCGGAAAGCCGGGAACTGTTTGGAAGCGATGTTGAAAGTGGAAATGAAAGTGATGGAAGTGGTCATAGATCAGTCTCAGTCCCTGGAACACCAGGTGGTCCAGGTAGTGGTCAGAGTAGTCCAGCCCATTCTGCTAGCCCTCCTGGTAGTCACAGAAGTGGCGGTTCAGGAACCCCAGATCAGCATAGTGGATCAGAAAACAGCAGGTCAGCTCCAGGAACACCTGTAGGGAGTGGATCTCCAACAGGAAGTCATAGAAGTGGCTCCCCTGCTGGTAGTAATAGGTCCAGATCAGGCAGTCCAAGATCTGTTAGGAGTGGCTCAAAGAGTCCAATGTCAACTAGAGAGGGTTCAGGGAGCCCAAGATCAGCTAGAGGCGCAGGGGGATCAGGGAGTCCCAGGTCAGCAAGAAGTGGTTCTGGCAGTCCAAGGTCACGATCTGGCAGTCCTCAATCTGGAAGAAGCCGTTCAAGGTCAGGCAGTCCACAGTCTAGGTCTAGGTCTAGATCTGGCAGCCCTAGATCAAGGTCTGGTAGCCACAAATCTGCAAGTTCAAGATCTAGATCAGGAAGTCCAAGATCAATGTCTCAAAGCCCTAGGTCAAAGTCAAGATCAAGAAGTCCTAGGTCAAAGTCAAGATCAAGAAGTCCTAGGTCAAAGTCAAGATCAAGAAGTCCTAGGTCAAAGTCACGTAGTCCAAGATCAAGGTCAAGAAGCCCAATTTCTAGATCAAGATCAAGGTCGAGATCTAGAAAGGACAGTGGATCAGGTAGTGACTCCGATATTGGAAGAAGGAAGAAGAAAAGAGCTGTGGGAAGTGATGATGAAGGATCACAGGGAAAAGTTGATGGTAGTGACTCCGATATTGGAAGAAGGAAGAAGAAAAGAGCTGTGGGAAGTGATGATGAAGGATCACAGGGAAAAGTTGATGCCACAGTTGATGATTTATTTGGTGATGCTGATGATATCAGTTCAGACGAGGAAGACAAAACCAAACGTTCTGATGATGAAGACAGAGATAAACGTTCAGGAGACAAGGATGAAGATAGCCAGAGGGTGAGAGGATCAGATGAGGAACAGGAAGAGGAACCTCAGGAAACGTTGATTGAAGTTGAGATCCCTCGTATCATTACAGATCTAGGGAAAACTATCCATTATGTCAAACTCCCTAACTTCCTTAGTGTAGAAACCAGACCATATGATATAGCATCGTATGAAGAAGAAATTGATGAAGATGACGTATTGGATGAGGAAGGTAGAGCCAGATTAAAATTGAAGGTGGAGAATGGTATACGATGGCGTAAAATAAAAGGTGCTGATGGAAATGATGTGTTAGATGAATTTGAGCAACCAAAACGAGAAAGTAATGCCAGGATGGTCCGATGGTCAGATGGCAGTATGTCACTTCACCTTGGACTTGAAATATTTGATGTGCACACCATGCCAATACAAGGAGATTTCAATCATTTATTTGTTAGACAAGGAACAGGTTTACAAGGACAAAGTGTCTTTAAAACTAAAGTAGCTTTCAGACCTCACTCTACAGAATCATTTACACACAGAAAAATGACATTGTCATTAGCTGATAGATCTACAAAGGCACAGAAAGTTAAAGTATTACCAATTCATGGCAAAGATCCTGATGCCAATCGTAATGAAATGATCAAGAAAGAAGAGGAAAAACTTCGAGCAGCTATAAGGTTAGAAGGAACCAGAAAACGAGCGAAAGAGAAAAACATGGCTCGAGGTCTCTCTGGTAACTATTTAGAAGATGAAGAAGAAGAGGAAGAGGGATCATTCTCTATATCAGCAATCAAAAAAGGATACAAAAAATCTAAAGAACGACCTCACATATATTCCTCTGACAGTGATTCATATGATTCAGACAGAGAGAGGTCTGGTGCACAGAGGTTAATGAAAGCCAAGAAAGGAGCTATTGAAGATGTAGGTTTTATCTTAGTTATACATATACCTCCTTACTTAACCTCACGTAGCACAACACTTCTGTTATACAGTATACCTCCTTACTTCACCTCATGTAGCACAACACTTCTGTTATACAATATACCTCCTCACTTAGCCTCATGTAGCACAACACTTCTATACAGTATACCTCCTGACTTAACCTCACGTAGCACAACACTTCTGTTATACAGTATACCTCCTTACTTAACCTCACGTAGTACAACACTTCTGTTATACAGTATACCTCCTTACCTAACCTTATGTAGCACAACACTTCTGTTATACAGTATACCTCCTTACTTAACCTCACGTAGTACAACACTTCTGTTATACAGTATACCTCCTTACTTAACCTTATGTAGCACAACACTTCTGTTATACAGTATACCTCCTTACTTAACCTCAAGTAGCACTACACTTCTGTTATACAGTATACCTCCTGACTTAACCTCAAGTAGCACTACACTTCTGTTATACAGTATACCTCCTTACTTAACCTCATGTAGCACAACACTTCTGTTATACAGTATACCTCCTGACTTAACCTCACGTAGCACAACACTTCTGTTATACAGTATATCTCCTGACTTAACCTCATGTAGCACAACACTTCTGTTATACAGTATACCTCCTGACTTAACCTCACGTAGCACTACACTTCTGTTATACAGTATACCTCCTGACTTAACCTCAAGTAGTTACAACACTTCTGTTATACAGTATACCTCCTGA

Transcript

Bpl_scaf_65581-1.6

ATTTAGTGTTCAAGCATGGCGGAAAGCCGGGAACTGTTTGGAAGCGATGTTGAAAGTGGAAATGAAAGTGATGGAAGTGGTCATAGATCAGTCTCAGTCCCTGGAACACCAGGTGGTCCAGGTAGTGGTCAGAGTAGTCCAGCCCATTCTGCTAGCCCTCCTGGTAGTCACAGAAGTGGCGGTTCAGGAACCCCAGATCAGCATAGTGGATCAGAAAACAGCAGGTCAGCTCCAGGAACACCTGTAGGGAGTGGATCTCCAACAGGAAGTCATAGAAGTGGCTCCCCTGCTGGTAGTAATAGGTCCAGATCAGGCAGTCCAAGATCTGTTAGGAGTGGCTCAAAGAGTCCAATGTCAACTAGAGAGGGTTCAGGGAGCCCAAGATCAGCTAGAGGCGCAGGGGGATCAGGGAGTCCCAGGTCAGCAAGAAGTGGTTCTGGCAGTCCAAGGTCACGATCTGGCAGTCCTCAATCTGGAAGAAGCCGTTCAAGGTCAGGCAGTCCACAGTCTAGGTCTAGGTCTAGATCTGGCAGCCCTAGATCAAGGTCTGGTAGCCACAAATCTGCAAGTTCAAGATCTAGATCAGGAAGTCCAAGATCAATGTCTCAAAGCCCTAGGTCAAAGTCAAGATCAAGAAGTCCTAGGTCAAAGTCAAGATCAAGAAGTCCTAGGTCAAAGTCAAGATCAAGAAGTCCTAGGTCAAAGTCACGTAGTCCAAGATCAAGGTCAAGAAGCCCAATTTCTAGATCAAGATCAAGGTCGAGATCTAGAAAGGACAGTGGATCAGGTAGTGACTCCGATATTGGAAGAAGGAAGAAGAAAAGAGCTGTGGGAAGTGATGATGAAGGATCACAGGGAAAAGTTGATGGTAGTGACTCCGATATTGGAAGAAGGAAGAAGAAAAGAGCTGTGGGAAGTGATGATGAAGGATCACAGGGAAAAGTTGATGCCACAGTTGATGATTTATTTGGTGATGCTGATGATATCAGTTCAGACGAGGAAGACAAAACCAAACGTTCTGATGATGAAGACAGAGATAAACGTTCAGGAGACAAGGATGAAGATAGCCAGAGGGTGAGAGGATCAGATGAGGAACAGGAAGAGGAACCTCAGGAAACGTTGATTGAAGTTGAGATCCCTCGTATCATTACAGATCTAGGGAAAACTATCCATTATGTCAAACTCCCTAACTTCCTTAGTGTAGAAACCAGACCATATGATATAGCATCGTATGAAGAAGAAATTGATGAAGATGACGTATTGGATGAGGAAGGTAGAGCCAGATTAAAATTGAAGGTGGAGAATGGTATACGATGGCGTAAAATAAAAGGTGCTGATGGAAATGATGTGTTAGATGAATTTGAGCAACCAAAACGAGAAAGTAATGCCAGGATGGTCCGATGGTCAGATGGCAGTATGTCACTTCACCTTGGACTTGAAATATTTGATGTGCACACCATGCCAATACAAGGAGATTTCAATCATTTATTTGTTAGACAAGGAACAGGTTTACAAGGACAAAGTGTCTTTAAAACTAAAGTAGCTTTCAGACCTCACTCTACAGAATCATTTACACACAGAAAAATGACATTGTCATTAGCTGATAGATCTACAAAGGCACAGAAAGTTAAAGTATTACCAATTCATGGCAAAGATCCTGATGCCAATCGTAATGAAATGATCAAGAAAGAAGAGGAAAAACTTCGAGCAGCTATAAGGTTAGAAGGAACCAGAAAACGAGCGAAAGAGAAAAACATGGCTCGAGGTCTCTCTGGTAACTATTTAGAAGATGAAGAAGAAGAGGAAGAGGGATCATTCTCTATATCAGCAATCAAAAAAGGATACAAAAAATCTAAAGAACGACCTCACATATATTCCTCTGACAGTGATTCATATGATTCAGACAGAGAGAGGTCTGGTGCACAGAGGTTAATGAAAGCCAAGAAAGGAGCTATTGAAGATGTAGGTTTTATCTTAGTTATACATATACCTCCTTACTTAACCTCACGTAGCACAACACTTCTGTTATACAGTATACCTCCTTACTTCACCTCATGTAGCACAACACTTCTGTTATACAATATACCTCCTCACTTAGCCTCATGTAGCACAACACTTCTATACAGTATACCTCCTGACTTAACCTCACGTAGCACAACACTTCTGTTATACAGTATACCTCCTTACTTAACCTCACGTAGTACAACACTTCTGTTATACAGTATACCTCCTTACCTAACCTTATGTAGCACAACACTTCTGTTATACAGTATACCTCCTTACTTAACCTCACGTAGTACAACACTTCTGTTATACAGTATACCTCCTTACTTAACCTTATGTAGCACAACACTTCTGTTATACAGTATACCTCCTTACTTAACCTCAAGTAGCACTACACTTCTGTTATACAGTATACCTCCTGACTTAACCTCAAGTAGCACTACACTTCTGTTATACAGTATACCTCCTTACTTAACCTCATGTAGCACAACACTTCTGTTATACAGTATACCTCCTGACTTAACCTCACGTAGCACAACACTTCTGTTATACAGTATATCTCCTGACTTAACCTCATGTAGCACAACACTTCTGTTATACAGTATACCTCCTGACTTAACCTCACGTAGCACTACACTTCTGTTATACAGTATACCTCCTGACTTAACCTCAAGTAGTTACAACACTTCTGTTATACAGTATACCTCCTGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04004	Leo1	Leo1-like protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005819	Family	Linker histone H1/H5	Interproscan
IPR007149	Family	Leo1-like protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23146	LEO1 PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000786	Cellular Component	nucleosome	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006334	Biological Process	nucleosome assembly	Interproscan
GO:0006368	Biological Process	transcription elongation by RNA polymerase II	Interproscan
GO:0016593	Cellular Component	Cdc73/Paf1 complex	Interproscan
GO:0030527	Molecular Function	structural constituent of chromatin	Interproscan
GO:0032968	Biological Process	positive regulation of transcription elongation by RNA polymerase II	Interproscan
GO:1990269	Molecular Function	RNA polymerase II C-terminal domain phosphoserine binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15177	LEO1; RNA polymerase-associated protein LEO1	-	Transcription machinery	ko03021	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_65581-1.6 global RNA-seq network