Gene detail

Detailed information of Bpl_scaf_64980-0.5 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_64980-0.5	HELICASE WITH DEATH DOMAIN-RELATED	Bpl_scaf_64980	353	22951	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_64980-0.5

ACAACTAAATTTAGTTTTGATGTAACAAATACATTTTGAAGCAATAGCAAGTTGAAAACAAAACTTCAAACTGCAGTAAAATTAATAAAGATCCATGAGACCATTTATTTTAATCAATTGATCATAGAAATTTAATTCTTATATTATAGGGTATATATTTCTGCCTAAAGCGTTGGTAAATTGAAACGGAAAAATTGTCAAAAATCCTTCAAGGTCATTGTCTGATAACAGAAATAGATGTACAGGATATTAGTACTGAATTTAATAATTTAGAAGAAGAAAAAGTAGCTTTAATAGTTTTGATTGACAGGGTAATAACTCCGCCCCCTGATGTGTGGTTCATTGAGTTTCTTTCATGTCTTCGTGAGGCTGGATATGAAGAAGCTGTCCAGAGAATAAATCCCAGATCAAGTGGTGAAATCCAAGGTGCAATGGCCGACAGTAAAGCAGATTTAGAGAATTACTCTATAGATGATCACTGGCAGAAACTAGTGAACTTGTTCTCTAAACACATCATAAATTGTGTCCGAGCTTCTGAAATACTTGTTAATTTACCTTCTGTATTTAATCAAGATGAGAAGAGGGAGATTCGACAGATAGAGAGAAAACAATCAAATGAGGAAGCAACAAGACTATTGTTAGAAAAATTAAATGAAAAAGATACGCCTGGAAAATGGAGTGAATTTCGTACAGCTTTGATTGCAGCAGATTATCAGTTTATCATAAATATTATTGAAGATGGCGATGTTGATTTTGAGAAAGATGAAATTTGGAAAAGTATGATCAATATATTTGAAAACAAACTGGCTGAAAAAATTATTCCATGTCAAATATTGCATGACTTGAGCAGCAAGAAAAATGGGGTACTTATAAGTGAAGAAGAATGTGATGAAATCCGCAAAGAGGAACGATATAGAGGTGAAAAGAATGCAACATTTATGCTTTTGACTTGTCTCCCTAAAAGACATCCACAGTGGTATCCAAAATTTATGGAAATCTTGTTCCTGAATGGTTGGGATGAAACTGTAGAAGAAGTGGATATTGAACAGTGGAAGATACTGAATAACAAACATCCAAACAAAGCATTAGAGAGTTCTAAGTTTTATTCAGATCCGAGTTTTAATATAGAGTTAGAATGTGGTAAAAAGTCGCTTGGCCAAAAACTTGAAAGTGATGTCAAAGAAGACCATGTGCGTGATATTTTAGTGGTAACAGCACAACTTCTGGTAAATGCCTTATTGGAACATGACGTAGAGATAAACGACTTCACGCTGATGGTCTTTGATGAGTGTCATCACGCACATGCCAAACATTCATACAACCAAATTATGCAGAGTTACATGGACCAGAAACTGAAAAATAAATCTCAGGATAAAAGTATTACATTGCCTATGATCGTAGGGCTGACAGCATCTGTAGGTGTGGGAAGAGCTAAGACCACTGATGGAGCAATAGCCTGGATTAAAACAATGATGGCTAACATGGATGCTGAAGAATTGGCCACAGTTAGGGTTAATGTTATTGAATTATCTGAATATGTCATTGTCCCAGATCAAATTATAAAATGTACAGCCCCAAGAAAGAAGAATTACTTTGGAGAGGCTGTAGGTAAAATCATGGAGGTCACAGAGAAATATATGAAGCAGTCTACATATGCTGAATGGATACCTGACAAAGACAGTGTTCTGAAGGCTCCACCAAACAAAGGATCAGACCAGTATACACAGTGGATCAGTGGACTCTGGAGAGAAACAGCTAAAATCTTTAATCAAGAAGCTAGACGATTCTTCACAACGTGTAGAGGATACCTTGAGTTATACAACAGAGCCCTAATTATATATGATGATGCTAGAGTGAAGGATTCTTTAGAATTCCTAGACGACTATATCAGGAGAATAAATGAAAACATCATTCCTGATGAAACTGACAATAAAATGATGTCACTTTACTCAATAAGTAAAGCATTATTAGAACACTGTGTCAACGATGAAAACCACAGAAATCCAAAACTTGATGCACTGAAAATGATGATTGCCAAGACTTACAAAGAAAATATGGATTCAAGGGGGATAATCTTTGTAAAAACGAGAGACCTAGTACATGCTATACAAAATTGGATGAAAGAAACAGAAGGACTAAAAACTCTAAATCCTATCAAGTTTGTTGGTGCACAGGCTAGTGGGGAAAAAGGA

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|CARD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04851	ResIII	Type III restriction enzyme, res subunit	Family	Interproscan
PF16739	CARD_2	Caspase recruitment domain	Domain	Interproscan
PF18119	RIG-I_C	RIG-I receptor C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006935	Domain	Helicase/UvrB, N-terminal	Interproscan
IPR011029	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR031964	Domain	Caspase recruitment domain	Interproscan
IPR041204	Domain	RIG-I-like receptor, C-terminal	Interproscan
IPR051363	Family	RIG-I-like Receptor (RLR) Helicase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14074	HELICASE WITH DEATH DOMAIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0016787	Molecular Function	hydrolase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for Bpl_scaf_64980-0.5 global RNA-seq network