Gene detail

Detailed information of Bpl_scaf_64914-0.5 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_64914-0.5	CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR FAMILY MEMBER	Bpl_scaf_64914	5731	43974	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_64914-0.5

ATGTACGAGAAACTGAAATATTTAAATTACTCCAGTTTCAATCCAAACACCAATCATGGGATGACCCATGTGGATAAATCTTCTGACCCATCAAGAGAAGCAATATTTATTGCAATAAAAATTAAAATCGTCACAGGCTCATATATCCTACAATTAGATAGAGCAAAATTTAACACCAATGAGAACACACAATGTAGGCTGTGCGACCAAGAATCAGAAGACTCAATTCATTTTATATTGAAATGTAAGACACTAGATCCAATAAGAACTCCATACTTAGAGGAAATAAACAAAATCATCCAAGTTGTTACTAAGAACTCATTCTATGGATACGACCATACAACTCAACTACAAATCATTATGGATTGTACCAAAATAGAAAATGAAATTTTCTCGAACCAAAAGAAGAGTAGGATACTTGAAATCACAGCTGATATTGAGTATATCTCCAGGAGGGGTGCAGGACAGGAAGTTGGAAGATCATGTCACATGCTCGAGTTCAAAGGAAAGAAAATCATGTTGGATTGTGGTATCCATCCAGGCTTACATGGAGTTGCCTCCCTTCCCTATCTAGATTTAGTAGATGTAGAAGACATTGATTTGATGCTTGTTAGTCACTTTCATCTTGACCATTGTGGAGGACTGCCATATTTCCTTGAAAAAACAGGGTTCAAGGGTCGATGTTTTATGACACATGCATCCAAAGCTATTTATAGATGGTTGTTATCAGATTATGTTAAAGTCAGTAACATAGCAACTGAAGATATGTTGTATGCAGACAGTGATATTGAGAAAAGTATGGAAAAAATAGAAACATTAAATTTTCACCAGGAAGTAGAAGTGAATGGAATTAAATTTTGGTGTTACACAGCTGGGCATGTCCTGGGAGCGGCTATGTTTATGATAGAAATAGCTGGAGTCAAGATTTTATATACTGGAGATTTCTCTAGACAAGAAGACAGACATTTAATGCAGGCAGAAGTCCCTAATGTTCATCCAGATATATTGATTGTTGAGTCAACATATGGCACACACATTCATGAGAAAAGGGAAGACAGAGAAGCTAGGTTTACTGGACTAGTCCATGATATAGTTAGTAGGGGAGGAAGGTGTCTCATACCTGTCTTTGCATTAGGGAGAGCCCAAGAACTTCTGCTTATTTTAGATGAATACTGGAGTAACCATCCAGAATTACATGATATTCCTATATACTATGCCTCATCTTTAGCCAAGAAGTGTATGACAGTATACCAGACATATATCAACGCCATGAACGATAAGATAAGACGACAAATCAGCATCAGTAATCCTTTTGTCTTCAAACACATATCTAATCTTAAGAGTATGGAACATTTTGAAGATATTGGACCATCTGTTGTGTTAGCCAGTCCAGGTATGATGCAGAGTGGTCTGTCTAGAGAACTATTTGAGAACTGGTGTACTGATAAAAGAAATGGTTGTATTATTGCTGGATACTGTGTAGAGGGAACTCTGGCAAAGCATATTTTATCTGAGCCAGAAGAAATTATTACCATGTCAGGGCAGAGATTACCCATGAAATGTTCTGTAGATTATATATCATTCTCAGCTCATACAGATTACCAACAAACCAGTGAATTTATCAGAGCATTAAAACCTCCACATATTATTTTAGTCCATGGAGAACAAAATGAAATGTCTCGACTGAAGGCAGCGCTGGTAAGAGAATACGAAGATGACACAGAATATCAACCAATAATTCACAACCCACGTAATACAGTACCAGTAGAATTATACTTTAGAGGAGAGAAAATGGCAAAGGTAGTTGGTAAACTAGCTGCAGACCAAACTAATTTACAAAATAAGAAAATATCTGGAATCTTACTGAAGAGGAATTTCAACTATCATATAATGGACCCGTCAGATTTATCTAACTACACAGACCTTGCCATGAGTACAATAACACAAAGAATTAGTATAGCTTATACTGGTACCCTACCATTGTTACGTTACTACCTACAGCAGTTGTCTAGTGATGTGGAGCAGAGTACTGTGAGTGGTAAACCAGCTCTTCAGGTGTTTAAATGTATAACCATCATACTAGAGGCAAGAATGGCCGTCGTAGAGTGGATGGCTAACCCTGTTGCAGACATGTATGCTGATGCTGTGATGACTGTTGTGTTGAGAGCAGAGTCAGATCCTATGCCTCAGAAAAATGTTCCACCTGCATTAGTGGTAGATAAAAGTCATGTACAGGAATGTTTGTTAGAGATGCTGGCAGATATGTTTGGTTCTAGTTCTATCAGTAAGCTGATCAGGAATGACAGAATGACAGTAACAGTAGACGATAATACAGCTGTCATTAACATAGATACACTGGATGTGATGTGTGAAGATGAGACATTACAACAAGTTTTACAGACTGCAGTGTCAAAACTTTTCTTAGCTTTAACTCCACTCAAAGCTAATACAGAGTTTTTATGA

Transcript

Bpl_scaf_64914-0.5

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07521	RMMBL	Zn-dependent metallo-hydrolase RNA specificity domain	Motif	Interproscan
PF10996	Beta-Casp	Beta-Casp domain	Domain	Interproscan
PF11718	CPSF73-100_C	Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term	Domain	Interproscan
PF16661	Lactamase_B_6	Metallo-beta-lactamase superfamily domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001279	Domain	Metallo-beta-lactamase	Interproscan
IPR011108	Domain	Zn-dependent metallo-hydrolase, RNA specificity domain	Interproscan
IPR021718	Domain	Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term	Interproscan
IPR022712	Domain	Beta-Casp domain	Interproscan
IPR036866	Homologous_superfamily	Ribonuclease Z/Hydroxyacylglutathione hydrolase-like	Interproscan
IPR050698	Family	RNA Processing Metallo-Beta-Lactamase Domain-Containing Protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11203	CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0004521	Molecular Function	RNA endonuclease activity	Interproscan
GO:0004534	Molecular Function	5'-3' RNA exonuclease activity	Interproscan
GO:0005847	Cellular Component	mRNA cleavage and polyadenylation specificity factor complex	Interproscan
GO:0006378	Biological Process	obsolete mRNA polyadenylation	Interproscan
GO:0006398	Biological Process	mRNA 3'-end processing by stem-loop binding and cleavage	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14403	CPSF3, YSH1; cleavage and polyadenylation specificity factor subunit 3	EC:3.1.27.-	mRNA surveillance pathway	ko03015	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_64914-0.5 global RNA-seq network