Gene detail

Detailed information of Bpl_scaf_64837-0.11 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_64837-0.11	INTEGRIN ALPHA	Bpl_scaf_64837	5322	34822	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_64837-0.11

TTTAAGGTTTGTGCTCACCTGTGGAAACTTCGTTCCAATGCGACGACTGGTATATTATATACTGTTGGTCGCTGTCATTTGATCAACAAGAACCTACGAGACGTTGACAGTGATCGACCTTTCCGTTTCACTAGAGATGAATTATATAAACTTAATACTGGGTATCATGCAGCGTTTGGTATGATTGGTTTCAGTGCTGCAAAGACAAAGGACCCGTTAGTAGCCGTTATGAGCGGACCAGGTTTGGATGAAATAGGTGGTTTTGTGACGTACAGAGAAGACAGATTAGATTACAACGTTTACCAAGCATTAGATGGTGTAAATACCAGATCATTTCTAACTCAATCATATATTGGATATTCTATAGCAGTAGCACGTTTCTTTAAGACTAATAGTTGTGCTAATGACCCAGTTTTACTAGGAATGCCCCGGTTTGCTACAGAAACAGAAGGTCACACAGGATCGGTTATCTTAGTGTGTGACAGTAGAGCACAAAGTGGAAAAGATATAACTATACTGAAACAATTCTTTGGGGATCAGATTGGATCTGGTTTTGGATATGGCATAATTGTCTGTGATTACAATGGTGATGGTGAGGATGACATCCTGGTGTCAGCGCCATTCTTCTCTACTGCTGATAACATAGACACAGGGAGAGTATTTGTATTTTTGGGAACTGGAAATGATGTTTTTCTAAACCCAATAAATGAAACATTGACTGGTGAAGACGCTGAACATGGACGATTTGGTAATGGTATGGCTAGTCTTGGAGATATAACAGCCGATGATATAGCAATATCGGCACCATTTGAAGGCTCAGGTGTAGTTTATATATTCAATGGTAGAGCTGGTTCAGTTAATACCAAATATTCTCAAAAGATAATTGGTAAAAACATACACCCGGGTATTATGTCATTTGGATTATTCATCAGTGAGTCACGTGATATGGATGCAAACGGATTCCCAGATTTTGTTGTTGGATCACCACTGTCAGATAGAATTACTTTGCTGAGAGGTAGACCTGTAGTCATGGTGACCCCGTCTCTAGAGGTCACTCCTTCAATTATTCCATTAAACTCCAGTAGACTTGACTGCTCTCCAGATGACAGCATGACACCATGTACAACTGTTACAATCTGTTTCTCCTTTACTGGACCAGGCTTAGATCTTATAGAAACGACTTATGTATCCTACCGTTTAAGCGTAGACTCTGACAGAACAGCTAGCCGACGTCCAAGTCGAGTTCACCTTATCTTCGACGATACAAACTTCAACAATATATTGGTCAGAGATAATAGAATGATACGGAAGAGAGTGGAAACATGTGACAACGTATTTGCACGAGTTTCTTCTGTAGACAGACAATTCTTCTCCTCGATAGAAGATGAAGTAAAAATGACAATGACTTACACTTTAAGTGATGGTTCTGCATCAACACAGGTTTTACCAGTACTTAATCCGAATTCACTAACCAGCTTTACAACTGTGGCTCATTTTCAGACTGGGTGTACCGGTCTGTGTGAACCTAACTTACAAGTTACTATGACGACGATGCCACCACGTATCATCATTGGACAAACTAATGACCTTGTCATAACTATAACTCTTATCAATACAAATGAACCAGCGTTTGCCCCGAGTGTTGTCATAAAGTTCTCCAGTAACACACAGTTTGTAACATTTCGGCCATTGCTAGAAGAAGGATCTGTCAGGGTGGTATGTTCGAAAGGAGCAGAAAATAACACTGTTCTCTGTAATTGTGGAAATCAATTGCTCCAGCACCAGATAGCAGCATTTCGTCTAAATTTTGATGTGTCTAGATCTATTCTTCAACAAGGAGTGTTTAACACGACTGACATTCCACTTAACGTTGAGGTAACATCTACTGCCATTGTACAATCAGGACTCGATGACAACCATGAAGATAATACAGCAAGTGTAGTTGTTCCTGTGGAATTCAAAGCAGCAGTTGAGATAAATGGAATTGGTACTCCAGAACAAGCATTTATCTCAGAAGAAACAGATACACTGACCTTTACACACTCCTATGATGTGTATAATACTGGTCCAAGTCCAATGATTTCATCAGAGTTATATATAGGACTACCTCTATACAATAGTTACCAGAAGATGATCTTAAGCTGGACCGATATACAGATAGACAGTGGTGACTTGACAACGAATTGTACAGTTATGCCTCCTATGAATGAAAGTATCAGATCGGATTCAGATTCAGACGGTAACCTAGATGTTGAAACGGAGAATCGAATAAAGAAAATGATATGTAATGATATAAATAATGGAGATTGCCTTATTGTCAGATGTCTAATATCAGTGTTAGATGTTGGTGGATCAACACAAATAGATATCAAGTTTGATCTAGATGCCAGTCTGATCACCTTTACAAAGGAATCTGCACACTACTATATTACTACGGGGCACATCTTCCCTGCTGATACTGATATACCATTCAGTCTTCTGAAAAACGTTTCAACTCAGGTTACGAGCGAGTTGTACCCAGCAGTAGCTACCTCAGAAGATGTGGAACCAGTTAACCTGTGGATTATAATCGGGGCTGTGTCAGGAGGTGTAGTCCTGTTAATAATAATAGGAGTTGTATTGTGGAAGTGTGGATTCTTCAATCGTACAAAGAAGGAACAGATCGATGAATTTAAAAGAAAAAGCAATTACTATGAGAAAAGAAAAACACAACGTCTGGAAGCTGCTAGATCTAAGGCAATGTCAAAGGTCATGTGA

Transcript

Bpl_scaf_64837-0.11

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01839	FG-GAP	FG-GAP repeat	Repeat	Interproscan
PF08441	Integrin_A_Ig_1	Integrin alpha Ig-like domain 1	Domain	Interproscan
PF20805	Integrin_A_Ig_2	Integrin alpha Ig-like domain 2	Domain	Interproscan
PF20806	Integrin_A_Ig_3	Integrin alpha Ig-like domain 3	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000413	Family	Integrin alpha chain	Interproscan
IPR013517	Repeat	FG-GAP repeat	Interproscan
IPR013519	Repeat	Integrin alpha beta-propellor	Interproscan
IPR013649	Domain	Integrin alpha, first immunoglubulin-like domain	Interproscan
IPR018184	Conserved_site	Integrin alpha chain, C-terminal cytoplasmic region, conserved site	Interproscan
IPR028994	Homologous_superfamily	Integrin alpha, N-terminal	Interproscan
IPR032695	Homologous_superfamily	Integrin domain superfamily	Interproscan
IPR048285	Domain	Integrin alpha, second immunoglobulin-like domain	Interproscan
IPR048286	Domain	Integrin alpha, third immunoglobulin-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23220	INTEGRIN ALPHA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005178	Molecular Function	integrin binding	Interproscan
GO:0007155	Biological Process	cell adhesion	Interproscan
GO:0007160	Biological Process	cell-matrix adhesion	Interproscan
GO:0007229	Biological Process	integrin-mediated signaling pathway	Interproscan
GO:0008305	Cellular Component	integrin complex	Interproscan
GO:0009897	Cellular Component	external side of plasma membrane	Interproscan
GO:0033627	Biological Process	cell adhesion mediated by integrin	Interproscan
GO:0098609	Biological Process	cell-cell adhesion	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K06487	ITGAV, CD51; integrin alpha V	-	PI3K-Akt signaling pathway	ko04151	PMID: 28812709
			ECM-receptor interaction	ko04512	PMID: 28812709
			Cell adhesion molecules (CAMs)	ko04514	PMID: 28812709
			Phagosome	ko04145	PMID: 28812709
			Focal adhesion	ko04510	PMID: 28812709
			Regulation of actin cytoskeleton	ko04810	PMID: 28812709
			Thyroid hormone signaling pathway	ko04919	PMID: 28812709
			Pathways in cancer	ko05200	PMID: 28812709
			Proteoglycans in cancer	ko05205	PMID: 28812709
			Small cell lung cancer	ko05222	PMID: 28812709
			Fluid shear stress and atherosclerosis	ko05418	PMID: 28812709
			Hypertrophic cardiomyopathy (HCM)	ko05410	PMID: 28812709
			Arrhythmogenic right ventricular cardiomyopathy (ARVC)	ko05412	PMID: 28812709
			Dilated cardiomyopathy (DCM)	ko05414	PMID: 28812709
			Human papillomavirus infection	ko05165	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_64837-0.11 global RNA-seq network