Gene detail

Detailed information of Bpl_scaf_64807-7.17 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_64807-7.17	REGULATING SYNAPTIC MEMBRANE EXOCYTOSIS PROTEIN	Bpl_scaf_64807	731559	800802	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_64807-7.17

ATGACAACTAGACGACCATCCCTGCCTCCCATGCCTGACCTCAGTCACCTAGACGAGGCAGAGAGGAAAATTATTGAGGATGTTATCAAGAGACAGCAGGAAGAGGAGGACAAGGAACAGGACATGATTAGACAAATGAAGCTAGATTTAGATACATATGCTCAGTCTGTCGGCAAAATATCGGAAGAAGCCAAAAAAGTGGGAGGACCTCAACAAGATACTGGTGCTGTCTGTCAGATTTGTCACAAAACCAAGTTTGCTGACGGGGTTGGCCACAAATGTCACTACTGTCAACTAAGGTCCTGTGCAAGGTGTGGAGGACGTATTGCTTTAAAACAAAAGATGAAACCCGGAACTGAAGACCCTAAACCTCAAAGTACAACTACTGCTACACATGTTTGGGCATGTAACATGTGCAAGAAAAAGCAGGAGATTTTAGCAAAAACAGGTCAGTGGTATCACGGTGGAATGGCAAAACCAGTGCAACTTGATGTGGAAACCCCATCTGGAAGTGAAACCGCCTCAATCAAAACTGACGTTAGTCCACCTAACGAAAAACGAGCAAGACATGATAAATATTCTGATAGTGGACAAAGCTCGGAAAAAGAAAATATTGACAAACGACCTATTTCACGAACAGGAAGTACGCACAAAAAAGAATTTAATCGTCAGTATTCATTAGATGCTCAAAAAAGTCATAGCGAATCAAAAGAGAGACTAAGTGATAGAACCAATGCTGGTATAGAGAAGGATAAATTACGGGAAAGGGGTCAATTACCTGAACGTCAGGGACGTGGTCGTGATCGTTCTCCTGCTGCTGTTAGACACCATAGTGAATCTCGATTATCTGAGACTGATAGACGATATGCCCAGGAAATGAGGCATAATGAACGCTATGGATCTTCTCAAAATCGTTCTCACGAAGGATCTCATGAAAGATCAACTGGCCAAAGAATGGGTGATGAATTTAAACATTTTGATAAAAAAGATGCTCACACAAGAATAATAGATGAACGAGATGGTCGAAGAGAAGTATCACATGACCGTACTCGTCTCAGAGGTAATGCAGAGGATGTTTCTGGTAGATCATCACGAGAAGGACGTTCTGGTCGGGAGGATCATTACAAACATACAACTGACTCTTATCACCAGACGGAGTCAAACCAAGACTATGCATCAAATAAATGGGGAGAGTCTCAAAATAAACAACATTTGCCTTCACATCATAGGGACAATATCCAAACTAGTAAAAGTGAACGACATCCTAGTAGCCGTCATTCACGCGACCGACTTCCTAGTGGTGGAAAAGACAGACGCTCCCCTACTCCGAGTGATCGGAGAAAAGACAGTGATATATATGATCAACGTGTGTCTTCTCCAAGTCTTTCCCGACATCATATACACATTGAACAGACTAGCGATTCTCCGTCAGTTTTAGAAAATGTTAATGAAAATGACAGATATTATGATAAGCAACATTTGGATCCCAGTACAGCGGCTACTGGGAGAAATTCTCAAAACAAACGTAGACAAAAACTTGAAACCATGATGTTTAGGAACGACTCGTTAAGTTCTGACCCATCTGATTGTGCACGGCCACCACCACCGAAACCTCATAAAAATAAACGTGGCAAAAAGACTCGTCAACATTCACTTAGTAGTTCAGATGATGAGATTCGATCAACACCCGAATGTTCTAGTGGCGAGGAACAAGAAAGTGAAAGTCTCATCAGTGAAAAAGGAGAGTTTGATATGGGAGATGAAAGATGGAGGAAAGATGAAATTCTAGCTGCTAAAATCAAAAAGTTTTTGTCGCATCCAGTCACATGGCAAAAATCAGCTGATAATTCTCGATGGATTGGTCACATGATTCTTAAAAAGACAGTTTTAGAAGGCGGTGGCCCAGATGACTCCGGTGCCATTCTGGGCTTAAAGATTGTAGGTGGCAGACGTACAGAAGCAGGTCAGTTTGGTGCTTTCATTACAAAGGTCAAGAAAGGCAGCATAGCAGATACTGTAGGCCATTTAAGACGAGGAGATGAAGTTGTTGAGTGGAATGGGCGATGTTTACAGCGAGCCACATTTGAAGAAGTGCATGACATTATCTTAGAATCTAAACAAGAACCACAAGTAGAATTGATAGTACATAGAAGTGTCAGTAATGGAGAAGTTCCTCCTGGCGTACATGTTGACCACATCAAAGGTTACAAAGAAGATACAAATGACAGAAACAGACCTAATCTTAGAGTTATGTCCCCTGCTTCATCAACAAGTCAAAGAAGTCATCAGTCACCAATGTCACTAGGGAAATTACAGTTGAAGATGTGGTACAACCATAAAAGTTTTGAGTTGATTGTTACAATCATATGTTCTGTTGGTCTTCCATTGTCGGATCAAGGAAAATTCCGTAATCCATACTGCAAGCTATATTTACTGCCTGATAGAAGCGAAAAAAGCAAGAGGAGAACCAAGACAATACCCAGCACAAATGACCCCACATGGAATCAAACATTTATGTATTACCCTATAAAGGAGTCAGACTTCCGTGACCACATCTTGGAGGTTACAGTCTGGGATTTTAACAAATATGGTGCTAGTCAGTTTCTAGGAGAGGTATTGATAGACTTGAACACAGCCAACATGATAGATGATCCATATTGGTACCATCTTAGTCAGCATGATAACTCCAGTATACCACTACCACAGTCATCTCCTAGAACAAAATCAAGTCAAGACCCATATGATTTACGGCATCGTCATTTGTCCCCGCCTACCAGTTCTCGTGGATTGAGTGACAGTGATGTTTCTGAGTTCGATATAGATGACAGTATTGGAGTGCATGTTTTACCAGGACAAGAGGAGATAAATGGGAGAAACAGGACATCACGGGTACGAGGGGGAGAAATGCTAGATATACCTGGCGATAAAGGTCCTCGAAGATCTAGATCACCAGTCCCAGATGAATCAGATCGCTCACGTCATAGGTCAAGGTCACCTTCAGCTTTTCACCATGTGCCTGAAAATGTATCTCGCTCATTGTCTCCTGCTAGATCATCAAATTCACCAGTACGACTGCTTGGTATGTCACCTTCTAGTACACCATCACCAAAGAAACGTCAGCTACCATCAATTCCTCTGGAAGCACAGATGAAGAGTCGAGATAGAGTTACACAAGACCTAGAAGAAAGAGCGCGGCAGATGAAAATGCGAATGAGAATAAAACCTTCACCTGGCTCTGACTCAGATTCTCATAGGGGGCGCTTTTCAGACACTGAAGGATACCGTCCTGGACGGGATTCTACCAGTAGAGATAGGACAAGGGGTTCATCTTATGACCGTGGGGATTTTTCTTATGAAAGAGACAGAGGAAGAGATTTTGGCCGTGTTCATGGTCACAGGTCAAGACGAAAAGAGATAAGTCCTGACATTGATGATATCGCAAGTGATGCCTCAGAAACCAGTGATATGTCTGAAGTATCAAAAGTCAGTATTAACAGCTATATGTCAACACAGTCAGAAAGACCCCAAAGAAAATTCAGTGAATTTACTCAGAAAATGGAAAGTAAATCAACCATGCCCCGCCGACAAGTAACCAGAACTGGCAGTAATGACAGCCAAGGATACGAGAAATCTGACGGCAGTATGTCAGACTCTGCCTTAAGTACACCGGTGACAGAAGGACGAAGGAGACGGACAAGTATCAGTAATAAAATGGCTAACTTTGTAAATTTACCGTGGAAAAGTAGTAGTGCGACACAGTTAGCAGAAGGGGGTAAGAAGAAAAGCAGTGTACAGAGGAGTGAGGAAGTGAGAGCTTCAGGTGATATCCATGTATCTAACAGAATGTGTAAACAGGCCAGTAAAGACTCCACTGATGGTAGTATAGGCAGTATCAGTAGTGACTCCGGCAGTGTGGTATGGTTACCTACTCTTGGGATGAGACTTGGACCCGAGGGTCAGTTTGGCGAGTTTGTTGAAGGTCTTGGTCCAGCTCAGCTTGTAGGGAGACAGGTGTTAGGTTCTCCATGTTTAGGAGAGATTCAACTTGGATTGTACGACAGGAAAGGTCACCTTGAAGTTGAGGTCATCAGGGCTCGAGGATTGATGTCAAAACAAGGGGCTAAAATATTACCAGCTCCATACGTTAAAGTGTACTTGATTGACGGCAAAAATTGTTTAGAGAAACAGAAAACTACTGTAGCTCGGAGAACTCTTGATCCATTGTATCAACAACAACTAGTATTTACAGAACAGTATGTCGGCAAAATATTACAGGTTACTGTTTGGGGTGATTATGGCAGAATGGACCGCAAAGTGTTCATGGGAGTTGCACAAATTTTATTGGACCATTTAGATTTAACAAACATTGTGATTGGCTGGTACAAGTTGTTTACTAGCTCATCATTGGTCGGTCATCATTCATCCACATCAACATTAGGTCATTCACGAAAAGGCTCAACTACTTCTTTAGACAGTGGCTATAATAATAACAACCTACGTTCATAG

Transcript

Bpl_scaf_64807-7.17

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00168	C2	C2 domain	Domain	Interproscan
PF00595	PDZ	PDZ domain	Domain	Interproscan
PF02318	FYVE_2	FYVE-type zinc finger	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000008	Domain	C2 domain	Interproscan
IPR001478	Domain	PDZ domain	Interproscan
IPR010911	Domain	Rab-binding domain	Interproscan
IPR011011	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR017455	Domain	Zinc finger, FYVE-related	Interproscan
IPR035892	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR036034	Homologous_superfamily	PDZ superfamily	Interproscan
IPR039032	Family	Rim-like	Interproscan
IPR041282	Domain	FYVE-type zinc finger	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12157	REGULATING SYNAPTIC MEMBRANE EXOCYTOSIS PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006886	Biological Process	intracellular protein transport	Interproscan
GO:0006887	Biological Process	exocytosis	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0031267	Molecular Function	small GTPase binding	Interproscan
GO:0042391	Biological Process	regulation of membrane potential	Interproscan
GO:0042734	Cellular Component	presynaptic membrane	Interproscan
GO:0044325	Molecular Function	transmembrane transporter binding	Interproscan
GO:0048167	Biological Process	regulation of synaptic plasticity	Interproscan
GO:0048788	Cellular Component	cytoskeleton of presynaptic active zone	Interproscan
GO:0048791	Biological Process	calcium ion-regulated exocytosis of neurotransmitter	Interproscan
GO:0050806	Biological Process	positive regulation of synaptic transmission	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15297	RIMS2, RIM2; regulating synaptic membrane exocytosis protein 2	-	Insulin secretion	ko04911	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_64807-7.17 global RNA-seq network