Gene detail

Detailed information of Bpl_scaf_64727-0.9 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_64727-0.9	MACROPHAGE ERYTHROBLAST ATTACHER-RELATED	Bpl_scaf_64727	125771	145149	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_64727-0.9

CCAGTTAAAGCAGACAAACCAGAAATGGCAGACATAAAAGCACTGGAACATCCTACTTTAAAAGTACCTTATGAGATATTGAACAAGAAATTTCGTGCAGCTCAAAAGACAATTGACAGAGAAATATCCCATGTTCATACAGCTAGCAGTGACATTGAGTCATGTCTTGAAGAGAAGAAAAAGATCAAAGATGTTTCTATAGTTATAGACAATATGGTGGAGAAACTTTGTCTATTGAAAAGAAAAGCAGATGAAAGTATAAATGAAGAACTGGAAGCAGCGAGTGTAATAAAGAGAAGAGTGGACCATCTCAAAGAGGCAGAGTTACTTCACCCACACACTAAGCCTTTATGGCACAAGAAAAGATTGGATAGAATGCTAGTGGAATATTTTCTGAGAGCTGGGTTTTATAACACTGCTATTAAATTAGCTCAGCAATCAGAGATAGAGGACCTGACAAATATTGACCTCTTTCTGACATCCAAAAAAATTGAAGAGTCGTTACAGAGAAAGGAGACTAGTCCCTGTCTTTCATGGTGCTATGAAAACAAGAACAAACTAAGGAAGATGAAAAGTACCTTAGAATTTAAGCTAAGAAAACAAGAATTTATAGAACTAGTGAAAAGTAACAGATGCTTAGATGCTGTTAAACATGCAAGAAAACATTTCTCTGGTTTAGATGATGACCAAAAATTATTAGAAGTCCAGAATGTGATGGGACTTTTAGCTTATCCTGGCTCTTCTCCTAGATCGCCTTATAAGGAATTGCTCGATGAGAATACCTGGGCAGAACTCGTCAAGCAGTTTAGATATGAAAATTTTAAACTTCACCAGCTAAATACAGATTCTGTGTTCACTATTACATTACAAGCAGGTCTTTCAGCATTAAAAACACCAATGTGTTACAAAAGACACATGGACACAAAGAATACAGACTGTCCAGTGTGTAACTGTCAGCTGAATGAATTGGGTAGGACTCTACCATACTCCCATTGTGCCAATTCTAAACTGATATGTGCTATTTCTGGACAACCACTAAATGAGCATAATCCACCGATGGTATTACCCAATGGTCATGTTTATGGTTTTAACTCTCTTACAGAGATGGCTGTGTCCAATGAAGGTAGAATTGTCTGTCCACGAACAAAAGAAATATTCCACATAGATGAAACAGAAAAAGTGTTTGTCATGTAATACATTCAAATCCTGAATCATATTATGAAAGAGAAAGAACACATGTGTGGTGTCATGTGACATAAAATTTATTCTCATGTCATGAATCTGAAGAGTAGTTTTAATGTGACATTCAAATGTTGGATCATGTGACAAACACAATGTTGTAGTGTCATGAATCACATGTGATGTATAAGTGGTCATGTGATGAATATATTTGATGGTTTGACTTACATAATAAATGGAGAAATTTCTCATTTACAGCTTAAATTTGTGATTAGGAAAGACAGCATCAACAATATCACTACTAAAGTTGTGAGTTCGAATCCAGCTCATGGAGAGGTGTACTAAGATACATGATGTGATAAAGTTTGTCAGTGACTTGTGGCAGGTTGGTGGTTTTCTCTGGGCACTCTGGTTTCCTCCACCAATAAAACTGACTGCCATGATATAACTGAAATATTATTGAAAATAAAATTAAACACCATAACCATAACCATAATAAGTATAAATGATTTCATTACCAGTATTTACATGAATTGTAAGGAGCTTATGTTATTGTGATAGCCTCTGCATTTATTTCCAGTTTATACATTGGATATGATCAACATTGCATATAGTGTAATTTAAACTCATGAACAATACAAAATCAGTTAACTGGTTTTATTGTAATAGTTAAAACAATGTATAGTCTAATTTTATCATACAATGGGTTCCATTGTGCTGTGTATTCACTTACTATTTCAACCAATTTTAGCTGCCATTTTAAAAAATTGAAGTAACACGGTATCATAGGATCTCTGTAAAATATTCACTCATTTAGAGTCTGCTGTCTTGTGATATTATTAACCTTACATGAAGGATTGTATGATTCATGAGTGACATCACTGACTTAATTCCACGAATTTCTTGAATTTTAGAGGATTAAAAAGCAACAGTCGGAAAGAATTTTTTTTATCAATGTTAAATAAATGTTTTAATATTTGCTTTAATATTGATTGAAATGGATGTTTATTTAAATAATATTTTAAATAAGATTGTGAAGTATTTGATTAAAAAGAAAGATTTTTTTAAATTCAATTCCTCCCACCCCTTTCTTTATATATGAATAATCATAATATGCTATCTTTTTGATAGCCTCAGGCCACCATTAAAGATATTCAATTCATTGTTTACTGGTTTTTATATGACCACAAAATTGTTCTCCCACTTTAAAAAAACAGGTGGCATGTGTGTGACAGTTTAAATATTGCCTTCATACAGAGAACTGCTTTTGCATGTATAGAATTTTTGCTGTGTTGTTTTATTTTAAGAAACAGCTTTGTATTGAAAGAGTTCAGTGAGTGAAAGTGATGTCAGTTTTTGTTTTGTGTGACCAGAATCCCCTAACAATCAGAGAAGTCTTACCGGTATTGTTATTTTTACAAGCTGTCATCCATATTACATTACACTTGTATATTAATGTATGTCTTGATAATGTTAAAGATTAGTTATGTTTTTTTTTAATTTGGCAAACTTGATAGTTGTAGTTATATGTCGAGAAGTACTGATGGATATATCTAATATTAATGTTGGGTTCAAACCTTTTTTTATTTTTTTTTATTTTAGTCATTTCAACCTGATAAGACAATGGATATTTTCGAGAATGACCATGTAAATTTCATTATATTTAATGTTTAGGTTAAATTGACCATATCCTGTACAAAAGCTATCCATGGCAAGAACATTTTTACAAGTTTTAAACTTTACGAAGAACATGGTTGATATGTAAATTTTAAATTACCTGGTTTTGAAACTTGTCAGTAGTAAGTAGTAAACAAGAGATTAGGTCTCAATATTTACAGCAGACATCGACAATTTGGATTTTCTATCGTTTTGTACAGGACAACAACATAGTAATACTAAGAATGTCTTATGTGTTTATACTATCATGCTATTTAGTTATGTATGCTATTTTGTTATGCATTTATGTTTTTTTCATGATAAGAGTTAAAACTTCATTCAACCATGCCAGACCATTTTTAGCTCACCTGACCCAAAGGGTCATGTGAGCTATTGCCATCACTTTTCGTCCGTCGACCGTCGTCTGTCCGTCAACATTTCACATTTTAATCTTCTCCTCAGAAACTACTGGGCCAATTGCAACCAAACTTTGGTGGAATGGTCCTTGGATGGCCCCCTTCCAAAATTGTGTCCGGTGTTCCCGACTTCAAACCAAGATGGCCACCAAGCCAAGTAATGATACAATAGATAAAACCAAAATCTTGACAATTCTATCAGTGATTAATTAGTAAGTAGTTATAATATACAAGTACAATGCATGTATGTAAATGTTATATGTTGAAGATATCATAAAATGCCTATATAGATTG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10607	CTLH	CTLH/CRA C-terminal to LisH motif domain	Domain	Interproscan
PF13445	zf-RING_UBOX	RING-type zinc-finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006594	Conserved_site	LIS1 homology motif	Interproscan
IPR006595	Domain	CTLH, C-terminal LisH motif	Interproscan
IPR013144	Domain	CRA domain	Interproscan
IPR024964	Domain	CTLH/CRA C-terminal to LisH motif domain	Interproscan
IPR027370	Domain	Zinc finger, RING-type, eukaryotic	Interproscan
IPR044063	Domain	Gid-type RING finger domain	Interproscan
IPR045098	Family	Fyv10 family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12170	MACROPHAGE ERYTHROBLAST ATTACHER-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004842	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0034657	Cellular Component	GID complex	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K18624	MAEA, EMP; macrophage erythroblast attacher	-	Ubiquitin system	ko04121	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_64727-0.9 global RNA-seq network