Gene detail

Detailed information of Bpl_scaf_64340-0.2 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_64340-0.2	CALRETICULIN AND CALNEXIN	Bpl_scaf_64340	73224	86227	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_64340-0.2

ATCGTAAGTAACACTGCCGAGTAGTGTCAAAATCGGATTGGATAATGTTTGTCAAATGTAAATATGCGGAATTTACCGAGATCACATCCGTAAATAGCCGGGCGCGTGGTAGACATCCATTGGTCCACCGAGTTATTTGAGTATCCAATAAAAATCTTCCATCTGGCCTGTCACGTGGGGAGCCGGCATCATATTCACAAGTAATACAAACATCACACAAGGGAACATCGGAGAAACTTGGAAGAAATGCGAATTTTCCTGTTATTTATCGCCGTTTTCGGCGTTGCATTCTCAGACCCAACTGTTTATTTCCAAGAGGGATTCACAGAGGATAACTGGAGAGACAGATGGGTAGATTCCACATTTAAAGGAGCTGACCAGGGAAAGTTTGAATGGACAGCAGGAAAATTCTATGGTGATGCTGACCTTGATAAAGGTATTCAAACATCTCAGGATGCCAAATTTTATGGAATCTCTCATAAATTCGATAAACCATTCAGCAATGAGGGAAAAACACTAGTCATCCAGTTCACTGTCAAACACGAACAGAACATTGACTGTGGTGGTGGCTACATGAAACTCTATCCAAGTGATCTGGACCAGAAAAATCTTCATGGAGATTCCCCATATCTCATCATGTTTGGACCAGATATTTGTGGACCAGGAACGAAAAAAGTACATGTTATCTTCACATACAAAGGAAAAAATCATTTAACCAAAAAAGAAATTAGATGCAAGGATGATGTATTTACTCATTTATATACACTAATTCTTAGACCTGATGGTTCATACCAAGTTAAAATTGATAATGAAAATGCAGAGGCAGGCACACTGGAAGAAGACTGGGATATTTTACCACCTAAAAAAATTAAGGACCCAGAAGCAAAAAAACCAGAAGATTGGGATGAGAATGAAAAGGTTGATGACCCTGATGACAAAAAACCAGAAGACTGGGACAAGCCAGAACATATCCCAGACCCTGATGCCAAGAAACCTGACGATTGGGATGATGAAATGGACGGTGAATGGGAACCACCACAAATTGATAACCCAGACTACAAAGGAGAATGGAAACCAAAACAGATAGATAACCCAAATTACAAAGGAAAATGGATTCACCCAGAAATTGATAACCCAGAATATGTAGAAGATAAAAATTTATATAGATATACTGATATTGGTGCTGTAGGATTTGATTTATGGCAGGTCAAATCTGGAACAATTTTTGATAATCTTTTGGTAACTGACGATGAAAAAAAAGCAGAAGAAGTAGGTAAAGAATTATGGGAAGTTACTAAAGGAGCAGAAAAGAAAATGAAGGATAAACAAGACGAAGAAGAAAGAAAAGTACGGGAGGAAGAAGAAAAGAAGAGGAAAGAAGAAGAAGATAAAACAAAGAAAGATGATGATGACAAAGAAGATGATGATGCAGATGAAGACGGTGATGATGCTGGAGAGGATGAAAAAGATGACCATGACCATGACGAATTATAGGACAGAAAAATATTAGGACTTTGTTTATAAATCATCTTAACATAAACTGTATGGGAAACTTTAAAAAATGTGATCATGTTTTATATTTAAAGGGACGTAATTCACAGATCGCGGGGGAAAAGATCTTCAAATTGTGTTATGTTAATCAAATCATCAGTCCGTTTTCTATTTGTATTTTAGAGTTTATATGATCATGAATGATTGAGGTTGAGTGAATGAGTAAATGTTAGTTGATGAATATTTGTCTGAAATTTGAGAGAAAAGTGTCAGGTCCAAATGTGTATGGTTGACAGGAGACAAACAAGCTACACATGTTCAACCAGAGTTCCCAATTTATTTTTCATAGGTAATAATCCACACTGTTGAGCTTTATTTATTCTTTACAAGTTATATTTTTTGGAAATGTAGAAGTTTTTATCATATTTCATTATTATTAATGTGTTATTATTGCATTTTGTTAGATATATAAATTGAGTATTCTGGTTGATTATTGAGTGTTTTTTATAAGGCCAAAAGTATGGTATTAAAACACTTCTTGTCTA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00262	Calreticulin	Calreticulin family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001580	Family	Calreticulin/calnexin	Interproscan
IPR009033	Homologous_superfamily	Calreticulin/calnexin, P domain superfamily	Interproscan
IPR009169	Family	Calreticulin	Interproscan
IPR013320	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR018124	Conserved_site	Calreticulin/calnexin, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11073	CALRETICULIN AND CALNEXIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005783	Cellular Component	endoplasmic reticulum	Interproscan
GO:0005789	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0006457	Biological Process	protein folding	Interproscan
GO:0030433	Biological Process	obsolete ubiquitin-dependent ERAD pathway	Interproscan
GO:0051082	Molecular Function	unfolded protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K08057	CALR; calreticulin	-	Protein processing in endoplasmic reticulum	ko04141	PMID: 28812709
			Phagosome	ko04145	PMID: 28812709
			Antigen processing and presentation	ko04612	PMID: 28812709
			HTLV-I infection	ko05166	PMID: 28812709
			Chagas disease (American trypanosomiasis)	ko05142	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_64340-0.2 global RNA-seq network