Gene detail

Detailed information of Bpl_scaf_63866-13.18 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_63866-13.18	NUCLEAR PORE COMPLEX PROTEIN NUP	Bpl_scaf_63866	1242501	1302421	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_63866-13.18

ATGTTGTGGTTAGTGTGTGCACCTGGAGTGTGGCCTGCTTCAGCAATGTTGTGGTTAGTGTGTGCATCTGGAGTGTGGCCTGCTTCAGCAATGTTGTGGTTAGTGTGTGCACCTGGAGTGTGGCCTGCTTCAGCAATGTTGTGGATAGTGTGTGTGCCTCGAGTGTGGCCTGCTTCAGCAATGTTGTGGTTAGTGTGTTTTAAAGTTATTAAGACATCAGAACTGAGTAGAATTGACAAAGAACATGTCCGAGATAAAACAAAAGTGATTATAAAAGAATACCCATGTGTGGCCTCTATAGAACTAGATATCCCTATAACATATGTAGGTTTGAGTTGTGATAATTTGAGTTTAGCTGTTGCAGTGGAGACTGAAGATTTATCACAGGTGTACATTTATGATGTTAGAAGCTTTTTAAGCCAGGGCAACCAGATAAGTCGATTTATAAAGGTTCCGTTGTCCTGTGGTTTGGCAGATTTGGCATGGAATCCAGAACAAGCAGCCATGTTTGTTTGTGTAATGGTTGATGGGAGCATTCAGATATTGGAAGCTGGAAATAATTTGACAATAAAGGCATCACTTACAGCGCAAGCTAAAGCTACATGTGTTTGTTGGAGTCCAAAAGGTAAACAGTTGGTTGTTGGACAAGATGATGGTATTTTAGTGCAGTATGATCAGGCTCTAACAAAGAAAAAAGTATGGCCATGTCCTGACATGTTACAAGGTCAACAAAGGGTGATTGGATTGACTTGGCTGTCAACTTTCAGTTTTATGGTAGCTTACATAGCTGTGGATGCTGAAATGGATGATCAACCCAACATTTTTTTAATCACAGGTGGTAAAGACGTAGCTCCAAAATATACACCATTTGAAGACCCTTGTTTTGGTGGTGGTGAAGAAAGGCAGAAGAAATACTTTTTCAATTACTTACCAAACTGGGAGATGATTACAGCTACGTCAAGTACTTCTAATGAGATAGCAGTATTAGGAAAACACTTTGATAATAAGACTGACATTGAAAGATGGAACCTGGATGATGCAGCCAGAGCAGAAATACCACTGAAGTCTGACCATAGTGAAGCCTATAGTATGGGTGTAGCTATAGATTTATCTTCTCAGCTTCCCTTACCTTTAGAAGATGAAAGTATACTCCCTCCATGTCCTATATTGCTCGTGCTATCTTCAGAAGGTTACCTCATTCCATTTTACATGGTATACACTCATCCTGAGGTACCCGTTCTGACCATACCTCCTGCTGTTTTAACCTCTGAGGGTGCAAGACAAGCATCAGCTGCTCCTAGTGTGACTGCAGGTACTATACCTAAGCAGCCAGCTGTACCAGCAGGACCCAGTTTTCAGTTTGTATCGACTAAACCTGCTAACACAACAGCTACCACAGGTTCTACTGGTTCCCCATTTAGCTTGCCTAGTTCATTATCTGATACCAGTACAAAATCAGCTTTTGGATCTTCAGCATCAGGTTTTAATTTTGGAAGTGATATGACAAAAACTGGTTCTATAGGAAGAACTGGTTCTCCAGTAGCAATTGGTTCTGTAGGAGCAAATGGCTCTGTAGGAGCACCAGGCTCTTTTGGAACAACTGGTTCCATAGGAAAAACTGATTCTCCAGTAGTAACTGGTCCTGTAGGAGCACCAGGTTCTTTTGGAACAACTGGTTCCATAGGAAGAACTGGTTCTCCAGTAACAACTAGTTCTGTAGGAACAACTGGCTCAATAGGAGCACCAGGTTCTTTTGAAACAACCAGTTCCTTTGGAGGAACTGGCTCCTTAGGAGCAATGATTTCTTCAGGAATAACTGATTCTATAGGAGGAATAGGATCCTTGGGAGGAACCAGTTCAGTAGCAGGAACGTCATCAACAAACACCAGTTCGTTTGGACAACCAGCCAATGCTGGACTTTCAAATCTCTTGAAACCTCAAGGAAAGGTCGGAGTTCAAGGTCAACCAAGTACTTCCCTTTCTTTTACTTCTCCAATCGTAAGCAAATATGTATCAACAACAACGCAAGCAGATACAACAGGATTTAATTTAGCTGCAGGATCAATTAAAAGCAGTGCCCCTTCACCAGCACAACCAGCTACTGTAACAGTAGCCAAGCCAGAGCCAACCAAACAAGTAAAACTGAGTCGGCATCAACCATCATTACCTGCTACTAGTGAAGTTCGGCAACAAATAACTCCACAAGAAGATACAGTTCCTGATAATCTTAACAGTACTTTTAATCACAGTATTATAGAAGAGATGGCTCATTTTGAAGATGAATTAATGAAGTTTCGTACAAAAGCTTTGGCGAACAAAGTCACCGTTGGTAGTGACAGAGAAATGGAAAATATTAAGAGAAAGACAGAAGATTTAACAAACTTCAGTGATGAAGTCAAACAAAATACAAAGGAGCAAAACAAAGAGATAGAAGACAAAAAATCACTGTTATTGGACTCTTATAGTATGGTAGAGGATTGTAAAATGAGAGAACAACGAAACTGTGATCCAAAATATGTTCATCTGTTACGATCTAAAACACTGGACCCAGCCAATCAGGAGAGACTTAGAAGCTTACAACAGAAAGTTCAGATATTGGACCAGGGACTGAGAGAATGTGACACTATCTTACATAACCAATGGGAAGAATACAAGAATAAGAACAATAGATTTACAAGGATGGCAACTCCCACGACAGATCTGATTTACCGTAGCATCAAAAGTAATAAGAATATAATACTACATCAGAAACAAGAACTGGATGATTTAGACAGTCAACTTAAACAACTGAGGCTTTACAATAAAACATCAACATGGCAGGATACACTTAGTGAATCAAGGAGTGCCGAGCTTTCGTCATTGGCTGATTCTCTTCTGGAATCTAAAACCGCCCCCTTGTCATCAACTAGAATATCAGAACCAGCCAGTCCACAGAAAATGGCTAGACTGAGAGAACATTTATCTAGAAGATCTGTTCCACGTATCAAATCTACCAGACCAGAGAATTTGTCAATGTCTAGAATAGTTTCTGCAGAGAGACAAGCAGTTGCTAGCAGATCTCCAGCAGTTCCATTACAGACAGAACAACCTCTGTCCAATGGAATCAGAGCTCCTCAGCAGACTGGCCAATCAGGACTTCCATCACAGATGATGACACCATCCTTACAACAACAGGCTCTTAACCTGACAGGCAGTTCTATAAGATTTCAATCTGATGTACTTCAGGCTAGACCACCAACAATTGTTAATAAAGTTACTGTAGGTCAACCAGGCATGACAGGATTTGGTGCAGGTATTCAGCCAAGTGGAACAACTTTTGGTAATCAGCCAAGTGGAACAGCTTATGGTAATCAGCCAAGTGGAACAGCTTATGGTAATCAGCCAAGTGGAACATCTTATGGTAATCAGCCAAGTGGAACAGCTTATGGTAATCAGCCAAGTGGAACAGCTTATGGTAATCAGCCAAGTGGAACAGCTTATGGTAATCAGCCAAGTGGAACAACTTTTGGTAATCAGTCAAGTGGAACAGCTTATGGTAATCAGCCAGGCATTACAACTGGATTTAGTGAAATGATGCCAACACTAGGATCAATCCCTGTGTTAAATAGTGGTATTGAAGACATCACACCACCATCATCGACTGGTTATGAAGAAGATGAGGAGTACGAAGATACGGAGACAGACACTAATGATGAAGATTACGGAGAAGGATTTGGACCGCAGTATAACATGCCTGTGCTGGAAGATGATACAAGTGGGAGGTTAACTGACAATATAGGTGGAGGTAAGAAGATGGCGTCAACTCCAGCCAAGCCTGATGGATTGAAGACTGGAGCAGCAGTACCTAGCAGGAATCTGTTTGGTTCTCCCAAACCACCACCAGATATCAATTCTGTTTCTGCCTGTCAGCCATTTGCATTTGGCAACACAACTAAGGAGACACCTGGATTTGCTTTTGGGGGTAGTACAAATTCAAACGGAGGTGCTATTCCAAAAATGTTGAATAGCTTTAGTTTTACTGCAAATAATCCACCAACACCAACTGAAGGTGCTATCCCCAAAACATCAAATGGATTTGATTTTACTGCAAGTACTTCAACCACCCCAAAAGTAGCGAAAGTTCCATCTGATAGCAGTTTTAAATTTACGCTCGGAAATACATCATCACCCGTAGCTTTCAAATTTGGACAGTCTGGAGAATCCTCATTTGGTACTGAAGAAACTACACCATTTTCATCCACAAAACCGACAACTGGATTTGATTTCTCCACTAAAACTGTAACAACTGAACAAAGACAAGCATCTGACAGTACAGGGGTTGAGGACAATGCGACCAACTTGAGGTTGGCTGACGATGATGGAGATGTGGAAACATCTAATCCTGCTTCTGATGTCGCAAAATCTACATCACAGTTAAATATAGATGGCACCAGATCTACAGCAGATTCAAGTGGAGACAATTCTGCTACAGCTTTAAAGGGAGACAAGTCTGCTGCAGGTTCATTTTCTTTTACTGTAACCAGCCTAACAACCTCTACTACACAGAATGTAACTGATTCAAGAAAATCAACCAGTGGATTTCAGTTCACCTTGCCTTTAACTGGAGGAACAGCTTTTAACACATCAACTGAAGCAGGAAGAAATGAACAGGAAGCATCTGATGATGAAGGGGAGGTAACTCAATCATCAGGTGGACAACCTGTCACTACGGCAACTGGTTCAACAGTTACTAAAAGTTTGTTTGGTACAACCACACCATTAATTGGCCAAAAACCATCAAGTTCTTCAGCAAGTACTGGACTCTTTGGTCAGTCTGCAACCAGTGAAACAGGACTATTTGGACAGACAGCAAGTTCATTTGGTACTACTGGACTATTTGGGAAGCAGACACAAGTTGCAACTGATGGGCAGACAACTCCACCCACTACTACAGGAAGTGGTGTAAGCAGTGAGTCTGCACCCAGTACATCTGATACAGTGTCAACATCAAGCAAAACTTCAGAAGAACAAAGTAAAAATGGAGAAAATGTGTCATCTACGACCGGGGGAGCTTCTCAACAAATATCTGGTAGTAGTTCATTTGGACAAAGCATCACCACAACATCGACAGGGTTATTTGGTCAAACTTCCACCTCTAATGGGGGATTGTTTGGGAAGCCATCAACCACAGCAACTAGTTTATTTGGACAAACATCTTCATCCTCGGGCACTAGCTTGTTTGGTCAAAAGTCTACTGCCACTAGTTCAGGACTATTCGGTCAGTCCACAACGTCTACAACGGGAAGTTTGTTTGGTCAAACTGCTACAACATCAACTGGAACATCTCTATTCGGACAGACAGCGACAGCAACTACAAGTGCCCCGACTTCTTTCGGACAGACCACGACAGCTAGTACCAGTTCCCCAGCTCCTTTTGGACAGACCACGACAGCTAGCACAAGTGCCCCAGCTCCTTTTGGACAGACCACGACAGCTAGCACAAGTGCCCCAGCTCCTTTTGGACAGACCACGACAGCTAGTACAAGTGCCCCAGCTCCTTTTGGACAGACCACGACAGCTAGTACAAGTGCCCCAGCTCCTTTTGGACAGCCTGCATCTGTATCTACAGGCATTCCTGCTCCGTTTGGACAGTCCACAACAGCATCTACAAGCGTTCCTGCCCCATTTGGACAAGGTGGTGTCACAGCTTCACAGTCATCTTCACCCTTTGGACAAACAAGTACATCTACATCAGAAAATCTCTTTATGCAAAAACCATCATCGGTATCGGGTGGGTTGTTTGGGCAGCCAGCAAATCCTGGAATGTTTGGTCAGCCAACCTCTGCCTCAAGTCCTGCAGGATTATTTGGACAGCCAACTGCATCTTCCAGTTCTAGCGGATTATTTGGACAGACAACTCCTGCTTCGGGATCTAGTGGATTATTTGGACAGTCAACTGCGACGTCAGGAACTAATGGACCTTTTGGTCAGCCGGTTTCAACTCCTAGTACAGGTGGACTATTTGGTCAACCAGCATCTTCTGGGTCTGCTCCGTTTGGTCAGTCTACTGCAACTTCTAGTGGTGGAGGACTGTTTGGACAGTCTTCTGGAGGATTTGGAATGGGGCAGACAACGTCTGGTGCTGCATTTGGACAAACGGCATTTGGACAGACAGCATTCGGACAAACCTCCAGCTCACCGTTTGGTCAAACGGCCACAACATCTAGCAGTGGCGGAAGTACATTTGGTGGGTCTATGTTCGGTGGTCTCGGTGGACAACCAAGTGCAGAGAGAGCAAGCACCAATGTATTTGGTTCAACATCATTTGGCAGTAGTTCTGCAACAAGTTCTGCATCCTCACTGTTTGGTACTCAAGGAAGTACAACATTTGGTTCTAATACATCAGCAGCTTTTGGAGGAGGGAGTTTTAGTGGAGGAGGAGGAGGTAGTGTAGCTTCCTCTGGATTTGGTGTATCAACACAACAGAGTAGTCCAGGTGGATTTGGGGCGGCTCCTGCATTTGGTACCAGTCCATCATTTGGCGGAGGAGGAGTCAGTGCTTTTGGTGCCAAGCCAGCCTTTGGAAGCAGTCCAACATTTGGTGGTGGATCTGCATTCGGTGGTCAGCCAGCATTTGGTAGCCCAGTAGGTGGTGGTGGTGGATTTGGTTCACCACAGTCAGGACAAGCACCAGGATTTGCTGGATTTGCTGGCACGAGTAGTAATGCGACCTTTGAGGCTCTAGCTGGAAGTAGTAGCGTACCAACATTTGGATCACTTTCACAAGGTACAGGTGGAGGGGGGTTTGGAACCTCTCCAGGGTTTGGAACAACAGGGACTCAGTCTCCTGGTTTTGGTGGAGGAGGGTTCGGAACGAATCCACAGCCAGGTTTTGGTACAACTACACCACCAAACAATCCTTCTTTCACGGGCTACAGATCATAA

Transcript

Bpl_scaf_63866-13.18

Protein

Bpl_scaf_63866-13.18

MLWLVCAPGVWPASAMLWLVCASGVWPASAMLWLVCAPGVWPASAMLWIVCVPRVWPASAMLWLVCFKVIKTSELSRIDKEHVRDKTKVIIKEYPCVASIELDIPITYVGLSCDNLSLAVAVETEDLSQVYIYDVRSFLSQGNQISRFIKVPLSCGLADLAWNPEQAAMFVCVMVDGSIQILEAGNNLTIKASLTAQAKATCVCWSPKGKQLVVGQDDGILVQYDQALTKKKVWPCPDMLQGQQRVIGLTWLSTFSFMVAYIAVDAEMDDQPNIFLITGGKDVAPKYTPFEDPCFGGGEERQKKYFFNYLPNWEMITATSSTSNEIAVLGKHFDNKTDIERWNLDDAARAEIPLKSDHSEAYSMGVAIDLSSQLPLPLEDESILPPCPILLVLSSEGYLIPFYMVYTHPEVPVLTIPPAVLTSEGARQASAAPSVTAGTIPKQPAVPAGPSFQFVSTKPANTTATTGSTGSPFSLPSSLSDTSTKSAFGSSASGFNFGSDMTKTGSIGRTGSPVAIGSVGANGSVGAPGSFGTTGSIGKTDSPVVTGPVGAPGSFGTTGSIGRTGSPVTTSSVGTTGSIGAPGSFETTSSFGGTGSLGAMISSGITDSIGGIGSLGGTSSVAGTSSTNTSSFGQPANAGLSNLLKPQGKVGVQGQPSTSLSFTSPIVSKYVSTTTQADTTGFNLAAGSIKSSAPSPAQPATVTVAKPEPTKQVKLSRHQPSLPATSEVRQQITPQEDTVPDNLNSTFNHSIIEEMAHFEDELMKFRTKALANKVTVGSDREMENIKRKTEDLTNFSDEVKQNTKEQNKEIEDKKSLLLDSYSMVEDCKMREQRNCDPKYVHLLRSKTLDPANQERLRSLQQKVQILDQGLRECDTILHNQWEEYKNKNNRFTRMATPTTDLIYRSIKSNKNIILHQKQELDDLDSQLKQLRLYNKTSTWQDTLSESRSAELSSLADSLLESKTAPLSSTRISEPASPQKMARLREHLSRRSVPRIKSTRPENLSMSRIVSAERQAVASRSPAVPLQTEQPLSNGIRAPQQTGQSGLPSQMMTPSLQQQALNLTGSSIRFQSDVLQARPPTIVNKVTVGQPGMTGFGAGIQPSGTTFGNQPSGTAYGNQPSGTAYGNQPSGTSYGNQPSGTAYGNQPSGTAYGNQPSGTAYGNQPSGTTFGNQSSGTAYGNQPGITTGFSEMMPTLGSIPVLNSGIEDITPPSSTGYEEDEEYEDTETDTNDEDYGEGFGPQYNMPVLEDDTSGRLTDNIGGGKKMASTPAKPDGLKTGAAVPSRNLFGSPKPPPDINSVSACQPFAFGNTTKETPGFAFGGSTNSNGGAIPKMLNSFSFTANNPPTPTEGAIPKTSNGFDFTASTSTTPKVAKVPSDSSFKFTLGNTSSPVAFKFGQSGESSFGTEETTPFSSTKPTTGFDFSTKTVTTEQRQASDSTGVEDNATNLRLADDDGDVETSNPASDVAKSTSQLNIDGTRSTADSSGDNSATALKGDKSAAGSFSFTVTSLTTSTTQNVTDSRKSTSGFQFTLPLTGGTAFNTSTEAGRNEQEASDDEGEVTQSSGGQPVTTATGSTVTKSLFGTTTPLIGQKPSSSSASTGLFGQSATSETGLFGQTASSFGTTGLFGKQTQVATDGQTTPPTTTGSGVSSESAPSTSDTVSTSSKTSEEQSKNGENVSSTTGGASQQISGSSSFGQSITTTSTGLFGQTSTSNGGLFGKPSTTATSLFGQTSSSSGTSLFGQKSTATSSGLFGQSTTSTTGSLFGQTATTSTGTSLFGQTATATTSAPTSFGQTTTASTSSPAPFGQTTTASTSAPAPFGQTTTASTSAPAPFGQTTTASTSAPAPFGQTTTASTSAPAPFGQPASVSTGIPAPFGQSTTASTSVPAPFGQGGVTASQSSSPFGQTSTSTSENLFMQKPSSVSGGLFGQPANPGMFGQPTSASSPAGLFGQPTASSSSSGLFGQTTPASGSSGLFGQSTATSGTNGPFGQPVSTPSTGGLFGQPASSGSAPFGQSTATSSGGGLFGQSSGGFGMGQTTSGAAFGQTAFGQTAFGQTSSSPFGQTATTSSSGGSTFGGSMFGGLGGQPSAERASTNVFGSTSFGSSSATSSASSLFGTQGSTTFGSNTSAAFGGGSFSGGGGGSVASSGFGVSTQQSSPGGFGAAPAFGTSPSFGGGGVSAFGAKPAFGSSPTFGGGSAFGGQPAFGSPVGGGGGFGSPQSGQAPGFAGFAGTSSNATFEALAGSSSVPTFGSLSQGTGGGGFGTSPGFGTTGTQSPGFGGGGFGTNPQPGFGTTTPPNNPSFTGYRS

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13634	Nucleoporin_FG	Nucleoporin FG repeat region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR025574	Repeat	Nucleoporin FG repeat	Interproscan
IPR026054	Family	Nuclear pore complex protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23193	NUCLEAR PORE COMPLEX PROTEIN NUP	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005643	Cellular Component	nuclear pore	Interproscan
GO:0006405	Biological Process	RNA export from nucleus	Interproscan
GO:0006606	Biological Process	protein import into nucleus	Interproscan
GO:0008139	Molecular Function	nuclear localization sequence binding	Interproscan
GO:0017056	Molecular Function	structural constituent of nuclear pore	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14317	NUP214, CAN; nuclear pore complex protein Nup214	-	RNA transport	ko03013	PMID: 28812709
K14317	NUP214, CAN; nuclear pore complex protein Nup214	-	Epstein-Barr virus infection	ko05169	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_63866-13.18 global RNA-seq network