Gene detail

Detailed information of Bpl_scaf_63854-8.3 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_63854-8.3	20 KD NUCLEAR CAP BINDING PROTEIN	Bpl_scaf_63854	866281	873447	-

Gene Structure

More details in Jbrowse Sequence

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR027157	Family	Nuclear cap-binding protein subunit 2	Interproscan
IPR034148	Domain	NCBP2, RNA recognition motif	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18847	20 KD NUCLEAR CAP BINDING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000339	Molecular Function	RNA cap binding	Interproscan
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005846	Cellular Component	nuclear cap binding complex	Interproscan
GO:0045292	Biological Process	mRNA cis splicing, via spliceosome	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12883	NCBP2, CBP20; nuclear cap-binding protein subunit 2	-	Spliceosome	ko03040	PMID: 28812709
			RNA transport	ko03013	PMID: 28812709
			mRNA surveillance pathway	ko03015	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_63854-8.3 global RNA-seq network

TOP

Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering
Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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