Gene detail

Detailed information of Bpl_scaf_63854-12.28 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_63854-12.28	FAT ATYPICAL CADHERIN-RELATED	Bpl_scaf_63854	1119492	1142809	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_63854-12.28

ATGGCAAAATCAGTTGTAGATCCTTACTTGACAGAGTGTAGTTTAGATGTGTTACTGGACAAGATTGTGAATTATGAAGATCCTACCCAGAGATCACATAAACTGGTTGTCATAGTTACAGATCATCTTGGTCTTAAATATCAACAGGAATTTGTTTTTGGTGTCATCAACACAAACGAACCTCCATATGATATCATTATTGGAGGAGAAATTACAAGTATCCCTGAAAACACACCTAATTATGAAATAGGTAAACTTGAATCACTGGATGATGATGTAGATGACCTTCACATCTATCAAGTGATAACTCATTGGGAACTCTTCGCTGTGAAGGCAGGAATCCTGATAGCTATACAACCAGTAGATTATGAACAGAAACAGAGCTATTCAGTGACAATAAAGTCCAAGGATAATGGAAATCCTTCTGAGTCTTTTACAAAAACATTTGTCTTCAGTGTGGATGATGAAAATGAAGCACCATCAGATATTAATGTGTCACCTAGTGAGGTTAGCAATGCAGCTGATGCTGGTGATGTTGTTGGCATAGTAACAGTGATTGACCCAGATAATAGTGGTACCACACAGAGACAGACCCATACATGTACAGTGGGAGGAGAAGGCGTTGGAATGTTCACTGTCGACAACTCAAATATGCAGCTGAAGGTTAGTGGTGCCATTCCATTGGAGAAAAACCAGACCACAATAGATATACATTGTACGGATTCTGGACAGCCACCATTATCTACCACGGTGTCCTTGATCATTGATATTAAAGAAACCATTCAAGTTCCAAAAATTATTGTTCTGAAAGATCAAAAAGTTGTCGTAGAAAATGTGAAGAGTTTTACTGTTGGTAAACTAGAAGTTGTTAACCAGCTCTCAGGAGACACAATCACAGGGTCATTCCTGTATTTCTTGACAGACCCAAGTATGCCATTCAAAATAAATGGTGGTATGTTACAAATTAATGGTCCACTGAACTATGAGTTTAATTCAGAGTGGATTGTAACTGTTACAGCTTCAGGAATGGACAGTGGTAACATAATGGAGCTTGAGGCAACATTTAAGGTAGAGGTTTCTAATGTAAATGAGGCCCCATACAAAATAACAGTTATTGAAGGAGGTTATATACTAGAGAATAGTGACACTGGAGCTACCATAGGGGACCTCAGTACAGAGGATCATGAAATGGACCAGACATATACCTACACTTTATTAGATATAGCTAAAGGCCTTGACATAAAGAATGCTGATGATCAATTGAAGGATGTTTTTATAGTAGATGGTGAAACTTTGAAAATTGGAACAGGAACAGAACACTTAAATTTTGAGGAAACCAAAGTTTTTACAATATTAGTAAATTCTAAAGATTCAGGAATTCCTCAAATGGATGTAAATGACACAATTAACATTGTCATACAAGATGTGAACGATCCACCTTCTGATATCACCTTCAGTAAATATACTATAGCAGAGAATAGTGTAATATCAACGGTAGTTTGTGATGTTATTGTAACAGATGAAGACAAGGATCAGAAACATTCCTGTGACCTAGACAACTCCAGAGTTGTACCGTTTGATATAACAGACGATCTGACGTTAGTTGTTAGTAAGGATGAATTAGATTATGAAGGAACAAGAACTTATGTTTTAGAGGTATCATGCAGAGATAAAGGTGATGATGGAACACAGTTTACTTACAAAAAAGCTTTAGTTGTCAAGGTTACTGATGCTAATGAGGCACCTTATGACATTACCATGACAAGTCTGGAGATCTCAGAATCTAGTCAACCAGGTGAAAGTGTGGGTGGAGTCCAAGCTACAGATCCTGACTCCACTGTGGTCACATTTACAGTAGAAGGATCGTCATTGTTTAAGATAGAAGGAGAGGACACACTAGTTACTACCAGTCAGCTAGATTATGAAGATCAATCTACTTATACCATAACTATTAGGGCTACTGATGATGGAGGCTTGTCTTCAACAAAAGATTTTATCTTAAAGGTGACAGATGAGAATGAGGCTCCTACGGTGATACACCTAGACAACACTGAAGTAGAAGAGAACATAAAAAAGGGGCATCTAATAGGGACATTCAGTACAGAGGATCCAGACAGGGGGCAATCATTTACTTATGCTTTAGTCCCTGGAGAAAGTGATGGTTATTTTGCTATAACAGACAATCAGTTGATAGCAGGACATTTGACCTTGGACTATGAAACTACTAATGAATATAAAGTGCTGGTTAAGAGTACAGACAATGGACAACCACCCAAGTCTGTACAGGCAGAATTCACTATTACCATTAAAGATGTCAATGAATCACCAGAAACCATCATATTTGAAAGTATATCCCCCATGCCAGAAAACACACCTTCAAATACAATTATTACCACTGTACAAGTTGATGACCAAGATGTTGGCCAATCACATTCTTGTAGCCTACAAAACAAGTCCACCCCATTTGCAATTCTAACCAATGAAAATGGAGGAATGACTTTGGTGCTGAATCGTCTTCTTGATTTTGAAACTGCAGAAAAGTATGATTTGATGGTGCAGTGTTCTGATGGGGAATTTGAAACTAAAAAGGTGATATCAGTTACTGTTGTTGATTTGAATGAACCACCGACATCCATTACGTTGTCAGGATCAAAGACTGTACTAGCAGACGGCAAGCCAGGAGATGTGATTAGTCAAATATCTGCTGATGATCCTGATCATAATCAAGTTCTCTCTTTTGTACTGAAAGGTCCTAATTCTGATATATTCAGAGTTGAAGGAAATAAATTGATTTTGAATTCAAGAATTCCATCTGAAATTTTGACTAGTGAAAATCCAGTGATAAAGATAACAATACAGGCCTCGGACAATGGCGATCCCATCAAATTTACTCAGCAAAACTTTACTTTACTAATCACAAACATTGAAATAGTAGCTAAAAAACTACCAGTTGTTGCCATTGACCACACAGAACTTCCAGAAGATTCTGAAATTGGGACGGTAATTGGAACTTTGTATAATATAAACGAATCTATTGGGGAAGATATCGTGTTTGAACTTGAAACAAATCCTGATGACTTGTTCTCAATTAAGGACAATAAACAATTGGTTCTAGCAAAGAGTTTGGCTGAATATGTTGGTACATCTGTTACTGTTGTTATCAAAGTGAAAAATACAGAAAGTTTTGAGACAGCTTCTCAGCCTGTCACTATTTTGGTAAAGCATGTTGATAGGTGTTTGAGAAATGGTAAAACGTGTAGTGACGATGCTAGATGTGTAAAGTTGAATCAGACATATCATGATTGTCATTGTGAACCTGGATTTACTGGTGACGGTTATTCTTGTTCAAATATTGATGACTGTATAGGAGAAGATACCTGTCAGAATGGTGCTACATGCATTGACAGTATAGAAATGTTTTCATGTATTTGTCCAAAAGATTTTGATGGAGAGCGATGTGAGATTTCTCTGCAGCCCAACAACCCATGCAAAACTAACCCCTGCAAAAACAATGCTGGTTGTGTTTCTGAAGATGGAAAGTCATATGTTTGTGAATGTAGTCCTGGTTGGACTGGAGCCACTTGTTCTAAGAGTGTAGACGATTGTGCTGATTCGACTTGCCTTGCAGGTGGTCAATGTGAAGACAGACATAGAACATACATATGTGAATGTCCGGCAGAAAGACTTGGACCTCGATGTCAGTACATTGCAACTGCATGCAAAGCAGATGATTGTCACAATGGAACTTCAGATATGTGTATTCCACTGTACAACAGTCAAAAACATGCATGTGCAGAGTCTATAAAAGATCTGGTCAAATTAGTGGATATGCCATCAACTGAAAATTTTGACAAAGCAGAAAATACAGCTAGGATATCGGATGTAATTTTAGCCCTTATACGTAGAACTGGTACACCTGATAATGCAGTACAGGTCTATATAGACAGTGTTTCTGATAATGGTGATGGGACCGCAAATGCTGATGTTATTGTTTTGAATGCAGAGGACATACCCTTTACAACAGACGAAGTCATAGACATGTTGTATACCAGTTGCACTGAATTAGAAAATGAAGGCCTGGCAGAAACAGATGTTTGTCCAGCTGTACAAAGCCTACATTCACAGAGAACTGTTCCAGTAGATGAACCAGGTTTATCAATGGCTGTCATAGGAGGGGCTGCAGGTAAATGGGTGTAA

Transcript

Bpl_scaf_63854-12.28

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00008	EGF	EGF-like domain	Domain	Interproscan
PF00028	Cadherin	Cadherin domain	Domain	Interproscan
PF12947	EGF_3	EGF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000152	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR002126	Domain	Cadherin-like	Interproscan
IPR015919	Homologous_superfamily	Cadherin-like superfamily	Interproscan
IPR018097	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR024731	Domain	EGF domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24026	FAT ATYPICAL CADHERIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0007156	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K16669	FAT4; protocadherin Fat 4	-	Hippo signaling pathway -fly	ko04391	PMID: 28812709
K16669	FAT4; protocadherin Fat 4	-	Hippo signaling pathway - multiple species	ko04392	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_63854-12.28 global RNA-seq network