Gene detail

Detailed information of Bpl_scaf_62970-1.5 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_62970-1.5	PSEUDOURIDYLATE SYNTHASE	Bpl_scaf_62970	75224	95525	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_62970-1.5

TAGAAAATAATTTTGTATTTTTCAGGATTTGATTTCTCGAGTTCAACAGCTGGAGTCTCATGTTAAACAACTTAGAAATGTCATGTTGAAGAATCAAGGTGAAACTAAACCTAAACATTGTCGCAAACAGAAGCAGAAAGAATTTGATTTTAAAAAATATAATACTAGACATGTGGCCCTAAAGATTTTCTACCTTGGTTGGGACTATCATGGTTTTGCAGTACAAGAAGACACAGACAAAACAATAGAATCAGCTCTATTTGATGCATTGATCAAAACTAAATTAATTGAATCAAGAGAAACATCTAATTACCACAGATGTGGACGTACAGATAAAGGTGTTAGTGCATTTAGTCAGGTGATATCGTTAGATCTTAGAACCAACTTATTAGAGGGACCAGGAATTAAAGTAAGAGAAGATGGTACTGCACATGAAAGACCAGGAGATAAGACTGTTGAGATTAAATATGTTAACATTCTGAATAAAGTTCTACCTCAAGAGATTAAGGTGTTGGCTTGGACTCCTGTTAGTAAAGATTTTAGTGCTAGGTTTGACTGTAAAAAGAGAACATATAAGTATTTTTTCCCAAAGGGAAACTTAAATTTACAGGTTATGTCTGAAGCTGCAGATAAGTTGATAGGGGAGCATGACTTTAGAAATTTTTGTAAGATGGATGTCGGTAATGGGGTTGTTAACTTCATGCGTAGGATCGTCAAAGCTGACATTGCTGTTATGGATGAAAGTGATAGTGGGTACCAGATGTGTGAGCTAACCATCACAGGCTTAGCATTCCTTTGGCACCAGATCAGATGTATAGTTACTGTCTTGTTCTTGGTTGGTCAAGGCAATGAAAAACCTCAGATTATAGATGAATTGTTAGATGTCAACAAACATCCACGGAAGCCACAGTACAGCATGGCATCAGAATTACCTTTAAATCTCTTTGATTGTGAGTTTGCAGATGACATTGAGTGGATATATGAGGCAGATCGACATGAAGAAAATATCCAACATCTTCAGCAAATGTGGGCACAGCATGCCATTAGAACTGCCATGCTGAAAAGAATGCTTGAAGAAATGGACAATGCTAAAGTAGAGACTGATAGTGACATTGCACCATGGGCAGATCTGAGTCCCCCATTATATACACAAGGGGATTGGATAGTTCCTGAGAAGGTCAAAGTTTATAGACCTCTGATGGAAAGACAAAAATGTGACAGTTTGGAAGATAGAATGGAATATTTTGCTAAAAGAAGGAAAATAATGTCTACTTCGGAAGCTTCATCAGAGGCAACATAGTATCCATAGCCACTGATAGAGGTCATGCTAAAAACAGTCTGTGTTGATATTCCATGTAACATAATTATCATCAGTCTGTCTCAGTTACCATGGAAATATCTGTTGGACATCCTATGAATGACAGAACTACGACAGAAGGATTCGTGATCTCCAAGACCAGACATCAGATCACCATAGAAGCATTTTAGTGTGAGGGTAAAGTCACCATAGCAATATTCATAAATTCACAAGTTTCCATGGAAACAGCTATCACCATAGTAACACATCTTATGCTAGTCATTTGTAAGCTGCAGTCATGTGACAGTGCAGTAATAAGGTGCTAACTATGTTGTTTTTGTTTTATTACTTCCTTGTTGTTTACTATCAAAACGCTGCATAATTTTATTGACAATATATTTAGTGCTAAATTGTAAGGAGCAATACAATGTGTATATGTATTTCTATTTGTAAATATATTTGTTTAAGTATCTAGGAGGAAGAAAATACTCAAATTTGTAATTATTCTTTATATATCTTGATAATTGATAAGTTTTAATTTAATTATAGAAATCACCTGATAATGTTACCGCCATATTGAAGGGATCATTCATTTTTCTTCCCCAACCATTTTTCGAAAGAGTGGAGAAATCACTTTTTAGAAACTCCCTCTCCACCTCAAATATTCTTTTCACCCCACCAATTAGCTACCAGTCTACTAAATCTTGAGGTCAGGGATTGAAATTAATGTAAGTCCCGAGGCCCTGTTATTTCTTGGATGGGCTTGTATAATTTCTGAAAACTTCAATGGAAAAGATCCAGATTTTAAGGAAATGGGTGTTCAGGCCTGCTTATGTGTAATTTCGTACACTTTTTGAGGTATTTAAAACTGAGATCATGCTGAGAGCTGTTGTGCAATTGGTTAATATGTATAACTTGCATTTTACTGGACTGTCAAAGATGAATGACAGGTCACCTGACATGACCCCTATGTAGGAAGCTATTAGATGCAAGTCTATCGCAAAAAAAAAAATATCCCAAAAACATTAAATTTTGATTAGATTCATGTTTTTTTCTTAAAATTGTTTGTTTTTAAAGTTTAAATATGTTTTTATTTAATTTTTGTATATATTTGTTCGGGGACAGAATTTGATTTGTTACGCTTTACTGAAAAATTTGTCTTTGTTACACGATTTCCTACAAAAATATATACATATACATACATAGATATATTATATCTTTTAAGGTGATTTAACATATTTTTGTTCTGTTTACATGAGAATGTGTATATATTATTAACATGCTGTTCAGTGCCAAATCATAATATAATATTGAAAATAGTTGTATTAATCTGTCGGTCATACAAAAAAAAAGAGGATGTTTCTCAGACCACGAGCCAATACATATCAGTGTTATTTAAATGTATGTCTCTTTGACATGGCAACCCCTGTTTGCTAATAATAACTTTATCTTATCATTATTGCAGGTGTCGGTACTTTGGAATATTATGTTTTTTATACTGGGGCTTCCAGGGTGAATGTATGTCATAATTGGAAGTCATTTTGTGCCACTTGAAGATAAGTTTTTACTTATAGGCAACAGGTGGAAATAACATTGTTGAAGTGTTTGAGAGTTTGACTACAAGTTTTTGAACGATGGACACACCGTTGTTTAGCAGACATTTAGGGGCATTTGACTCACTATCACATTTAATGTTATCCTTGCAATAACTAATGCTATAAGTAAAAACTTACCTCCAAGTGGCACAAAATGGCTTCCAATTATGACGTACATTCATCTCCTGCCTTCCAGAGGTCTATTTGTAAGGGTTCAAAAAGGGGTGGCTGTCTACCAGAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01416	PseudoU_synth_1	tRNA pseudouridine synthase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001406	Family	Pseudouridine synthase I, TruA	Interproscan
IPR020094	Homologous_superfamily	Pseudouridine synthase TruA/RsuA/RluB/E/F, N-terminal	Interproscan
IPR020095	Homologous_superfamily	Pseudouridine synthase I, TruA, C-terminal	Interproscan
IPR020097	Domain	Pseudouridine synthase I, TruA, alpha/beta domain	Interproscan
IPR020103	Homologous_superfamily	Pseudouridine synthase, catalytic domain superfamily	Interproscan
IPR041707	Family	Pseudouridine synthase Pus3-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11142	PSEUDOURIDYLATE SYNTHASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001522	Biological Process	pseudouridine synthesis	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0009451	Biological Process	RNA modification	Interproscan
GO:0009982	Molecular Function	pseudouridine synthase activity	Interproscan
GO:0031119	Biological Process	tRNA pseudouridine synthesis	Interproscan
GO:1990481	Biological Process	mRNA pseudouridine synthesis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K01855	PUS3, DEG1; tRNA pseudouridine38/39 synthase	EC:5.4.99.45	Transfer RNA biogenesis	ko03016	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_62970-1.5 global RNA-seq network