Gene detail

Detailed information of Bpl_scaf_62567-1.16 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_62567-1.16	TRANSCRIPTION INITIATION FACTOR TFIID	Bpl_scaf_62567	200076	264236	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_62567-1.16

ATGGATAATGATGAAGACCATGATGATGACAAGTCTATTTCTCTGACTGGTTTCTTGTTTGGTAATATAGACACGAAGGGAGAGCTCGATGAAGACTTTCTAGATGAGGAATCTAAAAGACTTTTGGGTTCCCTGGAGTTACTTGGAGGGATTGGATCAATGGTCAAAGAGATTACTGATGCAGAGGAAACCAGTCAACCAAACGACTTTTCAGAAGATCCAGATAACTATGACAACAAAGCATCAACAGCTGTAGATTACTCTGATATTAATGAAGTAGTCGAAGAAGATACAGATAACTCATTTGCTTTTGTTGGAACTGAGGAGGACAGTGAGTATCCAGATACCGATTCCAAATTAATGCCACCACCATCATGGCTGCCAAAATCAGTAAAGGCAGAAGATGATCCAAGTGTTATCTCCCCTGAGAAGAACTCTTTAAGTAAATTCCACACTCCACTTGCATCGCTACGACCTCCAGAGTTAGCCAATGTAGATGTTACTGAACTCTTTCCTGAATTTAGACCAGGACAGGTTTTGAGATTCTCCAGACTGTTTAGGCCTGTACATGTACCACATCTTTATAAACGGAAGAAAAAGAAGAAAACAGAAGATGGGAAGGAAGATAAACAATCTTCTGATACAAAGAAGGAAGAATACAAAGAAGAAAAGTTAGAGAATGCTTACGACGCTGATGTTGATGAAGACAAGAAAGATTTGTCTCATATGACAGCAGCACAACGAATCATGCACGGGTTGGAGAACCAAGATAGTGGTATTGAGGATAGGTCATCACAGAGTGAAGATGAAGTGTGGTCAGATGAAGAGGTTGAGGACACTTTTAAACTGAACTTAGGACGTCCAGCTAGACCTGAAGAATGCATGTCTGATGATGAGGATAAATTAATGAAGCCAATAGAGGCTAAGAGTGCCTCAGGACAACAGTTGTCATCCAATGAAATAGAACAGAAAGTGGAGGTAGCTCCCTGGAGATATGGTCCTGCGGCTTACTGGTATGATCAGATGGGAGTCAATGAAACTGGTGACAAGTTTGATTATGGTTTTAAGCTTAAACAGAAATCTCCGTCAGATCAAGAAGAGGCTCCGCTTGATGATGAATTTGATGATGAAGCTTACTTAATGGTGACTCAGTTACATTGGGAAGATGATATCATTTGGAATGGCGAAGAGGTCAGACAAAAGGTCATGAATTCAGCAAAGCAAAAAGCGTTATCTGCGGGTTGGATTCCAAGCACTACTTTTAGGACTGCTACACAATTTTCACAACAAGGAAAAGTGATGGAACCATTTAGTGGTATTGTTCCCAAGTTTCCACAGTTAAATCCTGGATATTCTAAAACCATCCCAGGGATGTCACCCATGTTTAACCCAGGACAGAAAGAAGCAGAAGAGAAAGACCATGAATGGTTCTCTATATTTCCTATAGAGAATTATGACCTGATTTATGGCAGGTGGGAGGATGATATAATATGGGATGCTCAGAACATGGATCACATTCCTAAGCCTAATATATTGACGTTAGATCCGAATGATGACAACATTATATTGGAAATACCTGAAGATAGGGACCCTAATGCTAAAGAAGAACCAATGAAAAAGGAAAAGGAGATTAAAAAATCAAAGTTACTGTTAGGAAAGGCAGGACTGATCAAAGATGATGATGAAGAAGAGGAGCTCAGAGAGCAGGAGAGACAAGCGTTCGGAGGAGGAGACATCTTCTTTATGAGGACACCACAAGATCTAACAGGAATGGACGGGGAAATATTCCTATCAGAGTATTCTGAAGAACATCCTCCTTTAATCAATCAAGTGTTCATATACAGATTGTTTGGTAAAAGTAAAGATAACCCTAAGAGAATTAAGATGGATGACATCAAAAAGGCTTTCCCCTCCCACTCAGAAAGCAGCATCAGAAAACGACTCAAGCTTTGTGCTGATTTTAAAAGAACAGGTATGGATTCTAACTGGTGGGTGTTAAAGCCAGATTTCCGTCTGCCTACAGAGGAGGAGATGAGAGCCATGGTTTCACCAGAACAATGTTGTGCTTATTATAGTATGTTAGCAGCTGAACAGAGGTTAAAGGATGCTGGTTATGGGGAGAAGTCCCTGTTTGCTGTTGATGATGATAATGACGAAGATACACAGATGAAATTGGATGATGAGGTGAAAACAGCCCCTTGGAATACCAGTAGAGCATATATAAGTGCTATGAAGGGGAAATGTCTCCTAGACCTTACTGGACCAGCAGACCCCACAGGTTGTGGTGAGGGGTTTTCATATGTAAAAGTCCCCAACAAACCACAACCAAGAGATGAAGGAAAGGATAACACACCAGTAAAGAGGACTGTCACAGGAACAGATGCTGATCTCAGGAAATTACCACTGAAAGATGCTAAACAACTACTTAGAAAGTTTGGTGTTCCTGAATCTGAGATGAAAAAGTTGTCAAGATGGGAGGTGATTGATGTAGTAAGAACCATGTCTACAGAACAAGCCAAAGCTGGACAAGATATCAAAGGTGGTATGGGGAAGTTTGCCAGAGGGAACAGGTTCTCTGTAGCTGAACATCAAGAGAGATATAAAGAGGAATGTCAAAGGATATTTGACTTACAAAACAGGGTATTGTCATCCAATGAAGTGTTATCTACTGATGAAGATTCTAGTTCTGCTGATGAATCAGACTTTGAAGAGATGGGTAAAAACTTGGAGAGTATGCTGTCAAACAAGAAAACCAGTTCACAGTTGAGTCATGAACGAGAGGAAGCTGAAAGAAAGGAGTTACACAAGATGTTACTGGGTGGTGAAGATCCTAAAGATAAAGGAAAGAAACGTAAAGATGAAGGGGAAGCCCCTTCTATGGGAGGTAAAAAGTTGAAGATAACAAGAACATTCAGAACAGAGGATGGAAAAATGTACACTAGAATAGAATGGGTAACAAAACCTGTGATTATAGATACATACTGTAAAATAAGAGAGAAGAAAGATCCTAACTTTATTAAACAAGTAGCTGCCATGGACGACCAGTTGAAGGAGGAAATGAGGAGAGAAAAAAGAAGGTTACAGGAAAGACTGAGGAGAATAAAGAGAAATGAAGAAAGAGACAAATTTAACCCCCCATCATCTAAAAAGAAGAAAAAAGTTGAAACCCCTATGAACACAAAGTTGAAATGTGGAGCTTGTGGACAGGTGGGACACATGAGAACAAATAAAGAATGTCCACTTTACAACAAGAGTGGCAATATGCCACCAGTACAGGTGGCAATGACAGATGAACAGATTGAAGATGAACACCAAATTTTACCAGAAGATGATCTCATTAAAGTGGAGGGAACCAAACTTAAGCTCTCTAAGAATCTTATTCAACATGCTGAAGAAGTTAAAAGGAAAGCTTTGGTTCTGAAGTTCCCTAAACAAGCTGTGAAGTCTGAGAAGAAGAAAAGATTAAGTACAATTATACAGTGTGATTATCTAAAGAGACCTAAGCAGACATCAAACAGAAGAAGGACAGACCCTGTTATAACCATGTCTACTATCTATGAACACATTTTAAATGAAATGAGAGAAATGCCTAATACACAGCCATTCCTGTTTCCTGTGAGCACCAAAGAAGTTCCTGATTACTATAAGTTAGTTAAGATTCCTATGGACATGCAG

Transcript

Bpl_scaf_62567-1.16

CACCGACTTCCGCTAAAATGTAAAAAACAATAATGAAATAATAGTTGTAAATCATGGTTTGAGCTGGTCAATGAGCTTCCATCATGGATAATGATGAAGACCATGATGATGACAAGTCTATTTCTCTGACTGGTTTCTTGTTTGGTAATATAGACACGAAGGGAGAGCTCGATGAAGACTTTCTAGATGAGGAATCTAAAAGACTTTTGGGTTCCCTGGAGTTACTTGGAGGGATTGGATCAATGGTCAAAGAGATTACTGATGCAGAGGAAACCAGTCAACCAAACGACTTTTCAGAAGATCCAGATAACTATGACAACAAAGCATCAACAGCTGTAGATTACTCTGATATTAATGAAGTAGTCGAAGAAGATACAGATAACTCATTTGCTTTTGTTGGAACTGAGGAGGACAGTGAGTATCCAGATACCGATTCCAAATTAATGCCACCACCATCATGGCTGCCAAAATCAGTAAAGGCAGAAGATGATCCAAGTGTTATCTCCCCTGAGAAGAACTCTTTAAGTAAATTCCACACTCCACTTGCATCGCTACGACCTCCAGAGTTAGCCAATGTAGATGTTACTGAACTCTTTCCTGAATTTAGACCAGGACAGGTTTTGAGATTCTCCAGACTGTTTAGGCCTGTACATGTACCACATCTTTATAAACGGAAGAAAAAGAAGAAAACAGAAGATGGGAAGGAAGATAAACAATCTTCTGATACAAAGAAGGAAGAATACAAAGAAGAAAAGTTAGAGAATGCTTACGACGCTGATGTTGATGAAGACAAGAAAGATTTGTCTCATATGACAGCAGCACAACGAATCATGCACGGGTTGGAGAACCAAGATAGTGGTATTGAGGATAGGTCATCACAGAGTGAAGATGAAGTGTGGTCAGATGAAGAGGTTGAGGACACTTTTAAACTGAACTTAGGACGTCCAGCTAGACCTGAAGAATGCATGTCTGATGATGAGGATAAATTAATGAAGCCAATAGAGGCTAAGAGTGCCTCAGGACAACAGTTGTCATCCAATGAAATAGAACAGAAAGTGGAGGTAGCTCCCTGGAGATATGGTCCTGCGGCTTACTGGTATGATCAGATGGGAGTCAATGAAACTGGTGACAAGTTTGATTATGGTTTTAAGCTTAAACAGAAATCTCCGTCAGATCAAGAAGAGGCTCCGCTTGATGATGAATTTGATGATGAAGCTTACTTAATGGTGACTCAGTTACATTGGGAAGATGATATCATTTGGAATGGCGAAGAGGTCAGACAAAAGGTCATGAATTCAGCAAAGCAAAAAGCGTTATCTGCGGGTTGGATTCCAAGCACTACTTTTAGGACTGCTACACAATTTTCACAACAAGGAAAAGTGATGGAACCATTTAGTGGTATTGTTCCCAAGTTTCCACAGTTAAATCCTGGATATTCTAAAACCATCCCAGGGATGTCACCCATGTTTAACCCAGGACAGAAAGAAGCAGAAGAGAAAGACCATGAATGGTTCTCTATATTTCCTATAGAGAATTATGACCTGATTTATGGCAGGTGGGAGGATGATATAATATGGGATGCTCAGAACATGGATCACATTCCTAAGCCTAATATATTGACGTTAGATCCGAATGATGACAACATTATATTGGAAATACCTGAAGATAGGGACCCTAATGCTAAAGAAGAACCAATGAAAAAGGAAAAGGAGATTAAAAAATCAAAGTTACTGTTAGGAAAGGCAGGACTGATCAAAGATGATGATGAAGAAGAGGAGCTCAGAGAGCAGGAGAGACAAGCGTTCGGAGGAGGAGACATCTTCTTTATGAGGACACCACAAGATCTAACAGGAATGGACGGGGAAATATTCCTATCAGAGTATTCTGAAGAACATCCTCCTTTAATCAATCAAGTGTTCATATACAGATTGTTTGGTAAAAGTAAAGATAACCCTAAGAGAATTAAGATGGATGACATCAAAAAGGCTTTCCCCTCCCACTCAGAAAGCAGCATCAGAAAACGACTCAAGCTTTGTGCTGATTTTAAAAGAACAGGTATGGATTCTAACTGGTGGGTGTTAAAGCCAGATTTCCGTCTGCCTACAGAGGAGGAGATGAGAGCCATGGTTTCACCAGAACAATGTTGTGCTTATTATAGTATGTTAGCAGCTGAACAGAGGTTAAAGGATGCTGGTTATGGGGAGAAGTCCCTGTTTGCTGTTGATGATGATAATGACGAAGATACACAGATGAAATTGGATGATGAGGTGAAAACAGCCCCTTGGAATACCAGTAGAGCATATATAAGTGCTATGAAGGGGAAATGTCTCCTAGACCTTACTGGACCAGCAGACCCCACAGGTTGTGGTGAGGGGTTTTCATATGTAAAAGTCCCCAACAAACCACAACCAAGAGATGAAGGAAAGGATAACACACCAGTAAAGAGGACTGTCACAGGAACAGATGCTGATCTCAGGAAATTACCACTGAAAGATGCTAAACAACTACTTAGAAAGTTTGGTGTTCCTGAATCTGAGATGAAAAAGTTGTCAAGATGGGAGGTGATTGATGTAGTAAGAACCATGTCTACAGAACAAGCCAAAGCTGGACAAGATATCAAAGGTGGTATGGGGAAGTTTGCCAGAGGGAACAGGTTCTCTGTAGCTGAACATCAAGAGAGATATAAAGAGGAATGTCAAAGGATATTTGACTTACAAAACAGGGTATTGTCATCCAATGAAGTGTTATCTACTGATGAAGATTCTAGTTCTGCTGATGAATCAGACTTTGAAGAGATGGGTAAAAACTTGGAGAGTATGCTGTCAAACAAGAAAACCAGTTCACAGTTGAGTCATGAACGAGAGGAAGCTGAAAGAAAGGAGTTACACAAGATGTTACTGGGTGGTGAAGATCCTAAAGATAAAGGAAAGAAACGTAAAGATGAAGGGGAAGCCCCTTCTATGGGAGGTAAAAAGTTGAAGATAACAAGAACATTCAGAACAGAGGATGGAAAAATGTACACTAGAATAGAATGGGTAACAAAACCTGTGATTATAGATACATACTGTAAAATAAGAGAGAAGAAAGATCCTAACTTTATTAAACAAGTAGCTGCCATGGACGACCAGTTGAAGGAGGAAATGAGGAGAGAAAAAAGAAGGTTACAGGAAAGACTGAGGAGAATAAAGAGAAATGAAGAAAGAGACAAATTTAACCCCCCATCATCTAAAAAGAAGAAAAAAGTTGAAACCCCTATGAACACAAAGTTGAAATGTGGAGCTTGTGGACAGGTGGGACACATGAGAACAAATAAAGAATGTCCACTTTACAACAAGAGTGGCAATATGCCACCAGTACAGGTGGCAATGACAGATGAACAGATTGAAGATGAACACCAAATTTTACCAGAAGATGATCTCATTAAAGTGGAGGGAACCAAACTTAAGCTCTCTAAGAATCTTATTCAACATGCTGAAGAAGTTAAAAGGAAAGCTTTGGTTCTGAAGTTCCCTAAACAAGCTGTGAAGTCTGAGAAGAAGAAAAGATTAAGTACAATTATACAGTGTGATTATCTAAAGAGACCTAAGCAGACATCAAACAGAAGAAGGACAGACCCTGTTATAACCATGTCTACTATCTATGAACACATTTTAAATGAAATGAGAGAAATGCCTAATACACAGCCATTCCTGTTTCCTGTGAGCACCAAAGAAGTTCCTGATTACTATAAGTTAGTTAAGATTCCTATGGACATGCAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00439	Bromodomain	Bromodomain	Domain	Interproscan
PF09247	TBP-binding	TATA box-binding protein binding	Domain	Interproscan
PF12157	DUF3591	Protein of unknown function (DUF3591)	Family	Interproscan
PF15288	zf-CCHC_6	Zinc knuckle	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001487	Domain	Bromodomain	Interproscan
IPR009067	Domain	TAFII-230 TBP-binding	Interproscan
IPR022591	Domain	Transcription initiation factor TFIID subunit 1, histone acetyltransferase domain	Interproscan
IPR036427	Homologous_superfamily	Bromodomain-like superfamily	Interproscan
IPR036741	Homologous_superfamily	TAFII-230 TBP-binding domain superfamily	Interproscan
IPR040240	Family	Transcription initiation factor TFIID subunit 1	Interproscan
IPR041670	Domain	Zinc knuckle	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13900	TRANSCRIPTION INITIATION FACTOR TFIID	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004402	Molecular Function	histone acetyltransferase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005669	Cellular Component	transcription factor TFIID complex	Interproscan
GO:0006366	Biological Process	transcription by RNA polymerase II	Interproscan
GO:0016251	Molecular Function	RNA polymerase II general transcription initiation factor activity	Interproscan
GO:0017025	Molecular Function	TBP-class protein binding	Interproscan
GO:0051123	Biological Process	RNA polymerase II preinitiation complex assembly	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03125	TAF1; transcription initiation factor TFIID subunit 1	-	Basal transcription factors	ko03022	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_62567-1.16 global RNA-seq network