Gene detail

Detailed information of Bpl_scaf_62509-1.39 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_62509-1.39	PULMONARY SURFACTANT-ASSOCIATED PROTEIN A	Bpl_scaf_62509	164296	186133	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_62509-1.39

ATGAAATTCTCATTATTTCATAAACTAGGTCAGGTTGGAGGAGGTCACTACGCCAGTGGAGGTGCCAGTGTTAATTATATTTGTTTACCAAATAGCCCGGATGCTGCAGAACCACTCAAACCCAGTTCTCATTATGCATTGCTGTACGGTGGAGAATATGAAGTCTATGAGCACAACAAACCTACGGGAATGAGAAGTGGTCTGAGAAATCAGGATGCCCCATGCGCTGTGTGTAATGCCAAAGGAAAAACTTCAGCATTAATGATTCCAGCGCAAATCAGTTATTTGCAAGAAGATATTGGACAAAGACTTCAATTACTACAGGATAACCAGAGTACAGAACAGTTTAAACAGTCAACCACAAAGCCTGTTGACAGCGAGATGGAACGCAGTGATTCTGGGATCGTAACTACAAGAAGCCAAACGTTTCAGCAAACAGCACAAAGTAGAACTGAGGGGATAGTTGAAGACAAAACCAGGCAACAAACAACGCCGCACGGAGGCGCAAGGCCAAAGACTACGAAAATGAATAGGGCGGCGTTATTTGCCGAAATGGAAGATGATAATGATATGTCCCCAATTTCGCAATCCAGTAATGAAACGAAAAGATCCCAGGATAACAAGGAGGATAAATTGTTAGAGATGATGCAGGCGTTTAATAAGAAGCTTGACGATTTGCAGAAAGACTTAGAAAAGGTTAAAAGAAATCAAGTTGGTACCCAACGCAACGCCAGAATTAGTGACCTCAAAAAGGATACTGAGTGTTTCAAATGTGGGCAAAAAGGTCACTGGAAAAATGAATGTAAAGAACAACAGCGAAAGCGACCACAAACAGAGAAAACGCCAGTAAAATCCGCAGCTAGACACCTGCGCACCAAAAAGAAACCTAGGCGTAACCATCAACGCGCATACTTGGGGGTTAATACTTCTAATAAGGAAGTCGGAATGTACATAGACTTGAAGATAAATGATCTACAAACGAAATTTCTAGTTGATACTGGAGCGACAGTTAGCTTGGTATCAAATAAGATATTTTACGCACTAGACAAGTCAAAAAGACCGGAAGTAGGACTATTAAGACAGACTGTCGTTTCTGCCAACCGAACGGATCTTACTAGTATGGGCCAAGCCTTCTTCAACCTGACAGTTGGCACTCAACAATGTACGGTCGAAATCGTTATTGCTGATTTGCCCATAGATGAAATTTTAGGATTAGACTTTATACAAAGTCAGAGATGCCTGATAGACTTAGAAAGAAATGTGATGAGATACGCAAATCAAGAAATTCCGTTGTACTTTGAGGGCCGCATTGGCTGTTTTCGAGTTACGGTCAAAGAAAATATAAGTATACAACCAGGAACAGAGATGATTGTGAAAGGATATGTCCAGGACGCACCTCAATTACGAAAAGAGTATAAATGGGTTATTCTAGAACCTTGTGAAAAGTTTTTAAAACGAGATTGTGCGCTGGTAGTAAAGGTCCTTGTGGAGCCCAAGGAGTGCGTTCCTGTCAGGTTAATGAACGTAACAGACGCCGTGCAAATCGTTATGTCTGGTACAACAGTAGCAGAACTTAGTCCTGTGGAATGCGTCCTAAATGAAACGATAGTAACTGGAAAAGAACAGACATTTCATGACCTTGATAAAGAATTAATGTCTTTGCAGTTACAAGAGAAAGATCGTGAATGGAACGTAGTTGTTAGAGAAAAACAAACGCCATCGTTTTGTGAAATTGGGAAATACGGTTTTGTAGTTAAATATGCAGATATCAACAAAGAGAAGTACGAAGTAATTGATGGTGTCTTCGACCCAGAATCAGGGGCTACTACAATTGAAACACACGATGATGAGCTACCAGTTGATGCAACCTGGGACGAATCTGAAATTTCACGCAGACCAAGAAGAAACAGAAAATATCCTATCTGGTTGCGTGATTATGAGCAACATTGGAAATTCTCATTATTTCATAAACTAGGTCAGGTTGGAGGAGGTCACTACGCCAGTACAGGTGCCAGTGTTAATTATATTTGTTTACCAAATAGCCCGGATGCTGCAGAACCACTCAAAGCCGGTACTTACATATATTATGCATTACTGTACGGTGGAGAATATGAAGTCAATGATCACAACAAACCTAAGGGAATGAGAAGTGGTCTGGGAAATCAGGATGTCCCATGCGCTTTGTGTAATGCCAAAGGGAAAACTTCAACTTTAATGATTCCAGGCCGCTCGAACTGCTATCAAGGATGGACAAAAGAATACAATGGGTATCTAATGGCAGGGTACCCTGGTCATAATGCTGCTTCTGAATATGCATGTGTGGATAAGGATGCTGAGGCAATGACTGGTGGTTCTGCTGATCATAATGGAGTCTTGTTTTATCCAGTTAAAACTGTATGCGGTTCCTTAAAGTGTCCACCCTACTCAGCTAACACAGATGTACCTTGCGCTGTCTGTACAAAGTGA

Transcript

Bpl_scaf_62509-1.39

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00098	zf-CCHC	Zinc knuckle	Domain	Interproscan
PF13975	gag-asp_proteas	gag-polyprotein putative aspartyl protease	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR001969	Active_site	Aspartic peptidase, active site	Interproscan
IPR021109	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR051077	Family	Calcium-dependent Lectin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24024	PULMONARY SURFACTANT-ASSOCIATED PROTEIN A	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0004190	Molecular Function	aspartic-type endopeptidase activity	Interproscan
GO:0005615	Cellular Component	extracellular space	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for Bpl_scaf_62509-1.39 global RNA-seq network