Gene detail

Detailed information of Bpl_scaf_6196-2.7 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_6196-2.7	LONG-CHAIN FATTY ACID TRANSPORT PROTEIN	Bpl_scaf_6196	218568	254696	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_6196-2.7

AACATGTTTCGCATGCGTGATATTAAAATACTTTTAAAATAAGTTAACTATTTGGACTTGCACGCGAACAGTTTAAATACTACTTAAATATGTATATAATTTACATATGAAAGAGTACCAGAAGTTAAAATATTTGTGAACTCGGAAGAACAAGACAGGTGGATTAATTTACTGTGTAAACACATTTTGCGGTTTTAACATTTGTGGGAGCGGCATATATTTGTACTTTGCAAAAACAAAGTTCAAAATGCCAGACAAGACAAGAATGTGGATGATAATATCAGGCTTGGCCGGAGCTGTTGGAGCTATATACTTATATGTTAAATTTAAAATACCATGGTTACCTGCAGACTTTAAATTAATGACGTGCATATTCAAAACCGGATTCATGCTTGCGAAAAGGGAGAAGCATAATATATTACCCATCGATATATTTGAGCAGACGGCAGACAAATATAGGGGCAAAACCATGATCATATATAAAGACACTTCATACAGTTACGCAGAAGTAGATAGAATGGCAAATAAAATAGCGAACGTAGCTTTAGGATTAGGCTTAAAGCAAGGTGATACAGTGGCCATGTTGATGTACAACGAGCCAACATTTATATGGACTTGGTTTGGCTTTCAGAAAATTGGAGTTGAAGTCGCTTTTATTAATTTCCACCAAAGGAGGAAACCCTTATTCCATAGTATTACCACTAGTGGAGCCAAAGCTGTGTTTCTAAATACAGGCGCTGACTTGTATGCAGCGATTGAAGATATTGCTTTTGAATTTGAGAATATTGACCTCTATACATTTGAGCCGTCTGACCTCCATGAGTCCACAATATTTAAGAGTCTAGCGTCAGATTTGGAGTCAGCAGCAGACGATAGAATATCACGTGATTGTAGGTCAAATGTCAACGTAAGATCTACAAACTGCTTGATATTCACCTCTGGAACAACAGGGTTACCAAAACCTGCAATAGTGACCCACTTAAAAACGCATGTTGGTGGATGGTTGTACAATTATTGCGATGCTACTGCGGATGACATTTTGTACGAGCCTCTCCCTCTTTACCACTCGGCCGCATCATTAATAGGTGTTGGAGCAGTGGTGCTAAATGGTTTAACATTAGTTCTTGTAGAAAAATTTTCTACAAGCAGATTTTTTGAAGATTGTCATAAACACAAAGTAACAATGATACATTATGTGGGTGAAATGTGTCGGTATTTGGTGAATTCTCCAAAGACTCCATACGATACAGATCACAAGATTCGTGTTGCCCTTGGAAATGGATTAAGGAAAGACATTTGGACTGAATTTCAGAGCCGATTTCAAATAAAAGATGTAGTTGAGTTTTATGGAGCTACTGAACTTCCTGTGGGGTTTATTAATGTATATAACAAGGCTGGTGCCGTTGGAAAGTTAAACCCTCTTGTGAAAAAACTATTTAACCTTGCATTTATAAGATTTGACGCAGAGACATTTCAACCAGTGCGCAATCAACAGGGACAATGTATTCCTGCTATAGTGGGGGAACCAGGCTTAATGATCACTAAACTTGACAATAGAATACACTTTGAAGGATATAAAAACAAGGAAGAAGCTAACAAAAACAAGATCTTTCATGATGTTTTTGGAAAAGGTGACAAGTATGTCAATTCTGGGGACTTGTTTGAATTTGATGAAGATCACTTTTATTATTTCTACGATCGTCTTGGAGATACTTTTAGATGGAAAGGTGAAAATGTATCAACAACAGAAGTAGCAAACATCATATCAGAATTACCATTTATAACAGATACATGTGTGTATGGAGTTGCTGTTCCTGGTTGTGAAGGGAGGGCAGGTATGGCAGCTATTACTTTAACTGAAAACGAGAAGAAAACACCAAGTGAAGATATGATATTGAAGATTGAAAAACAATGTATAACAGAACTAGCAGGATATGCCATTCCTCGATTTTTGCGATTTCGACAACTCTTAGATCTGACATCAACTTTCAAGCAGCAGAAAGCTACCATGAAAACAGAAGGATTTGATATCGATCTCATACATGAACCACTTTATTATTATGATGTTAAACATATGAAATATTGTTTGTTAAATAAGGAGATTGAAAGGAAAATTATCAACCAGGAATTGAAATTGTAAGATAATTTTTATATTATATACTTTGCTTAGTATATTGTTTTATCTCTTGATCTGATCAGCAGGGAACTTACATCATCCCACATCTGGTTTTCTTTGACACTGAAAATAGCTTAGTTTTTTTTATCGCATAATCATGTCATTTTGTGTACAAATAAATAATGGAGTCAACTATGCTTCAATGATTTCAGTC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00501	AMP-binding	AMP-binding enzyme	Family	Interproscan
PF13193	AMP-binding_C	AMP-binding enzyme C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000873	Domain	AMP-dependent synthetase/ligase domain	Interproscan
IPR020845	Conserved_site	AMP-binding, conserved site	Interproscan
IPR025110	Domain	AMP-binding enzyme, C-terminal domain	Interproscan
IPR042099	Homologous_superfamily	ANL, N-terminal domain	Interproscan
IPR045851	Homologous_superfamily	AMP-binding enzyme, C-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43107	LONG-CHAIN FATTY ACID TRANSPORT PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004467	Molecular Function	long-chain fatty acid-CoA ligase activity	Interproscan
GO:0005324	Molecular Function	long-chain fatty acid transmembrane transporter activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K08749	SLC27A6, FATP6; solute carrier family 27 (fatty acid transporter), member 6	-	PPAR signaling pathway	ko03320	PMID: 28812709
K08749		-	Insulin resistance	ko04931	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_6196-2.7 global RNA-seq network