Gene detail

Detailed information of Bpl_scaf_61943-0.5 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_61943-0.5	LARGE SUBUNIT GTPASE 1 HOMOLOG-RELATED	Bpl_scaf_61943	2941	51961	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_61943-0.5

ATGGGGAAAAAGAAAAAGGAAGGTAATCTTGGCAAGATGCTCATCAAAGACAGATTTGGACAAAGAAAACAAAGAGGTTCAGGAGACAATTTCCTTCATACAACAGAACTTAATGATGGTTATGACTGGGGAAGATTGAACTTACAGTCAGTCACAGAACAGAGCAATCTGGATGATTTTCTTTCTACAGCAGAGCTAGCTGGAACAGAATTTACTGCAGAGAAGCTGAACATAAAGTTTGTGGATCCAAGCAAAAATAGCGGATTGTTATCAGAGACAGAGCAGGCTAATGTGGAATGTCTACATGAACAACACAGGAATCTTCTGAGAATTCCACGCAGGCCACATTGGGACAGTACAACATCACCAGAAGAACTAGATAATAGAGAGAAGGCATCCTTTTTAGAGTGGAGAAAATCATTATCTACGCTGTCAGAGGTAGAAGGTATTGTTTTGACACCCTATGAGAAAAATTTAGACTTTTGGAGGCAGCTGTGGCGAGTAATAGAAAGAAGTGACATTATTGTACAGATCGTTGATGCTAGGAATCCATTGTTGTTTCGTTGTGAAGATGTTGATGATTATGTGAAGGAGGTGAATCATGACAAGGTCAATTTACTGCTAGTAAATAAAGCAGATCTGCTTACACAAGAACAGAGGAAGATGTGGTGTGACTATTTTACAGACAATAATATAATGGTGGCATTTTGGTCAGCACTGGCAGAAACAGAAAGACAGAAAGAGATACTAAATGAAGAAGTCTCATCAAATGAGAATATGGATGAAGATGAATATGATGATGATGATGATGATGATGAAAGTGAAGAAGAAATAGATGAAGTAGATGTTGAAGACAAAGATTTACAAAATGAAAAACATTTATCGGAAAATGTATCAGATGAAATCGAGGAACGTTTGCAAAGTGCTAGTGTAAAAGATGGACAACAAACATCATCAGAAGGAGAAAGCACAAGCAAAAACACCGGTGATTTAACAGGTTCGGAAACATCCTGTGATATAGGAGACATATTATCAAACACTGAAAATGGTGATACTAGTAAAGATGAGACATCTGAAATGGACCATACTGGTAATGTTGTAGCAGACGACGGTTATCATAAAAACTCACCTGAACTTTTAAGTGGAGAGGAGCTTCTAAAATTGTTTAGAATTTTACACAGTGGCCCTAAAGCACATGAAGGACAAACAACAATTGGAATGGTTGGTTATCCTAATGTAGGGAAAAGTTCTACAATAAATGCCATACTGAAGATGAAAAAGGTACCTGTATCTGCCACACCTGGCAGAACAAAACATTTCCAGACTTTATATGTAGAGAATGACTTAATGTTATGTGACTGTCCAGGTTTGGTGTTTCCATCCTTTGTTTCTACCAAGGCAGAACTGGTAGTCAACGGTATCCTGCCTATAGACCAGATGAGGGATCATCTTCCTCCTGTTGCTCTTGTATGTCATCACATACCCAAGAATATACTTGAGGAGATGTATGGCATCAATATACCTCTCCCACTGGAAGGAGAGGATCCCAACAGACCACCGACAGCATATGAATTGTTGAATACCTATGGAATGATGAGAGGGTTTATGACATCTAATGGTTTACCAGACTGTCCAAGAACATCTAGATATATACTAAAAGATTATGTTAAAGGAAAACTGCTGTTCTGTAAAAACCCTCCAGGAACAGATCCTGAGGAATTTAACTGTGCCTGTACAGTCATACCAGAGGACAAGAAAAAAGTAGTGTCAGCCTCACTTAAGGCGTCTGCCCCAAATCAGTCCAAATTAGATAAAGAATTTTTCACAAAGATTCAACCTAAAGCTCATTCTAAAGGACCAACTGCAGTATCTAACTTTACTCGTGTCGAAGGCGTGAGGCAAATAGGGTCAGAATCTAGTACATCTTTACCCAGTACCAGTACACAGTCTTTAAATGAAAAACCGTGGAAAAAACATCACAATGTGAAAAAGAAGGAAAAATTACGAAGACAGTATAAAGACCATGATGCAGATTAA

Transcript

Bpl_scaf_61943-0.5

ATCGGCACTATCGCTGGACGTTAATGTAGCGACCAGCGGGAGCGTAATATAACGACTGGATTATTCGGGTTACACGTGAACTTGATATTGCAGATTGAAAACTAAAATTTAGAAATGGGGAAAAAGAAAAAGGAAGGTAATCTTGGCAAGATGCTCATCAAAGACAGATTTGGACAAAGAAAACAAAGAGGTTCAGGAGACAATTTCCTTCATACAACAGAACTTAATGATGGTTATGACTGGGGAAGATTGAACTTACAGTCAGTCACAGAACAGAGCAATCTGGATGATTTTCTTTCTACAGCAGAGCTAGCTGGAACAGAATTTACTGCAGAGAAGCTGAACATAAAGTTTGTGGATCCAAGCAAAAATAGCGGATTGTTATCAGAGACAGAGCAGGCTAATGTGGAATGTCTACATGAACAACACAGGAATCTTCTGAGAATTCCACGCAGGCCACATTGGGACAGTACAACATCACCAGAAGAACTAGATAATAGAGAGAAGGCATCCTTTTTAGAGTGGAGAAAATCATTATCTACGCTGTCAGAGGTAGAAGGTATTGTTTTGACACCCTATGAGAAAAATTTAGACTTTTGGAGGCAGCTGTGGCGAGTAATAGAAAGAAGTGACATTATTGTACAGATCGTTGATGCTAGGAATCCATTGTTGTTTCGTTGTGAAGATGTTGATGATTATGTGAAGGAGGTGAATCATGACAAGGTCAATTTACTGCTAGTAAATAAAGCAGATCTGCTTACACAAGAACAGAGGAAGATGTGGTGTGACTATTTTACAGACAATAATATAATGGTGGCATTTTGGTCAGCACTGGCAGAAACAGAAAGACAGAAAGAGATACTAAATGAAGAAGTCTCATCAAATGAGAATATGGATGAAGATGAATATGATGATGATGATGATGATGATGAAAGTGAAGAAGAAATAGATGAAGTAGATGTTGAAGACAAAGATTTACAAAATGAAAAACATTTATCGGAAAATGTATCAGATGAAATCGAGGAACGTTTGCAAAGTGCTAGTGTAAAAGATGGACAACAAACATCATCAGAAGGAGAAAGCACAAGCAAAAACACCGGTGATTTAACAGGTTCGGAAACATCCTGTGATATAGGAGACATATTATCAAACACTGAAAATGGTGATACTAGTAAAGATGAGACATCTGAAATGGACCATACTGGTAATGTTGTAGCAGACGACGGTTATCATAAAAACTCACCTGAACTTTTAAGTGGAGAGGAGCTTCTAAAATTGTTTAGAATTTTACACAGTGGCCCTAAAGCACATGAAGGACAAACAACAATTGGAATGGTTGGTTATCCTAATGTAGGGAAAAGTTCTACAATAAATGCCATACTGAAGATGAAAAAGGTACCTGTATCTGCCACACCTGGCAGAACAAAACATTTCCAGACTTTATATGTAGAGAATGACTTAATGTTATGTGACTGTCCAGGTTTGGTGTTTCCATCCTTTGTTTCTACCAAGGCAGAACTGGTAGTCAACGGTATCCTGCCTATAGACCAGATGAGGGATCATCTTCCTCCTGTTGCTCTTGTATGTCATCACATACCCAAGAATATACTTGAGGAGATGTATGGCATCAATATACCTCTCCCACTGGAAGGAGAGGATCCCAACAGACCACCGACAGCATATGAATTGTTGAATACCTATGGAATGATGAGAGGGTTTATGACATCTAATGGTTTACCAGACTGTCCAAGAACATCTAGATATATACTAAAAGATTATGTTAAAGGAAAACTGCTGTTCTGTAAAAACCCTCCAGGAACAGATCCTGAGGAATTTAACTGTGCCTGTACAGTCATACCAGAGGACAAGAAAAAAGTAGTGTCAGCCTCACTTAAGGCGTCTGCCCCAAATCAGTCCAAATTAGATAAAGAATTTTTCACAAAGATTCAACCTAAAGCTCATTCTAAAGGACCAACTGCAGTATCTAACTTTACTCGTGTCGAAGGCGTGAGGCAAATAGGGTCAGAATCTAGTACATCTTTACCCAGTACCAGTACACAGTCTTTAAATGAAAAACCGTGGAAAAAACATCACAATGTGAAAAAGAAGGAAAAATTACGAAGACAGTATAAAGACCATGATGCAGATTAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01926	MMR_HSR1	50S ribosome-binding GTPase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006073	Domain	GTP binding domain	Interproscan
IPR023179	Homologous_superfamily	GTP-binding protein, orthogonal bundle domain superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR030378	Domain	Circularly permuted (CP)-type guanine nucleotide-binding (G) domain	Interproscan
IPR043358	Family	Ras GTPase GNL1-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45709	LARGE SUBUNIT GTPASE 1 HOMOLOG-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000054	Biological Process	ribosomal subunit export from nucleus	Interproscan
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14539	LSG1; large subunit GTPase 1	EC:3.6.1.-	Ribosome biogenesis in eukaryotes	ko03008	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_61943-0.5 global RNA-seq network