Gene detail

Detailed information of Bpl_scaf_61340-9.7 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_61340-9.7	MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B	Bpl_scaf_61340	936172	957784	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_61340-9.7

ATGCATGAATGGTGGTGGTTCAATTGCTACGAGTCTGTTGATTATCCGGTACATCATAATGGCCTTGGTTCTCAAACGGCGTTGCTGGAAAAGAAGACATCTGATGATGAAAACTCAATGGGGCGTGTTCATATCAAATGGGCAATTAGCCAAGACCAGACTGAACGACTTTACAGTGAACTTGGTGTTGAGAATATTTCAGATGAAAGTAGTGATAGTTGTTATGCATTGGAGTTAACTCCAGCTGTTATTGTCAACAAGGATAAACCTGTGGCTCCTGGTGCTCCAAGAATTTTGTTGGCAAGTCAGAAACCAAACTTGAACCAGAGTTTTACTTCAGATTTTACACCAGAAGATATAGAATTGATATCCCCATTGTCAACACCAACCAATAAGAAATTACCCCATTACTTTCAACAAGATCATGATATGGTCAATGAATCTATGTATGACTATTTTACAGAACTATCAGATGAAGTTATGCTGAACATATTTAAATGGTTGCCACGATTTACTCTGGCAAAATGTGCATGTGTGTGTCAACGATGGAATACCCTTGTCTGTGATGACCATCTATGGAAAAGACTTGACTTGTCAAACAGAACATTGTTATCTGAAGTGCTAGAAAATGTCCTTCGTAGAGGTGTACAAACTCTAAGATTAGCAAAGTCAGAGATTGAAGGTCCTATGTTCACTGCTTCAGCCAACATCTTCAATTTTACAAGGATGTGTAAAGTACAGAATTTAGACCTTAGTATGGTGTCCATTACACCTCATGCTTTACAAGAATTGTTATCATCATGTAAACAGCTAAAGAAACTCAGTTTAGAACACTGTCTACTTAATGAAGAAGTTTGTCATCATATAGCTGACAACAAGAATTTAGAAGTTATTAATCTAAGTATGTGCCAAGGAATTACAGTGAATGGATTGATGCCTATATGTACCAACTGTGCTAGTCTAGAATCTTTGAACATTGCCTGGACAGGATTACACAGACACAGTGTTGTATATCTATCTCTCTGTCTACCTCCATCATTACAGAAACTAAACATCAGTGGTTGTAGAGAAAATATAACAGACGAAGAAATTTTACAGCTAGTTAAACGATGTAACAACTTAAGAGAATTAGATCTTAGTGATTCAACAGTTTTAACTTGTAACAGTATTCACCATATATCACATTATTTAAAAAGATTAGAGTACATAGCTTTAAGTAGATGTTATCGTATTTCTCCTACTTCAGTGCCAGAACTACAGAATATTGTATCACTAAAGGCTGTAGATGTATTTGGTATGCTGAGAAACACAGCCTTACAGCAATTACGAGACACCATACGTTGTGACGTTAACAAGTTCCCTTTCTCCAGTATAGCCAGACCTACAACAGGAATCAGAAGGACCAGTATTTGGGGGATACCTGTTAGAGACAATATATTGTAATGATACTCCTTTCTCCAGTATAGCCAGACCTACTACAGGGATCATAAGGTCCAGTATTTGTGGGATACCTGTTAGAGACCCACTCTTTGGTTATAGCCAGTAATCATATGCAACATTATTATTATAGTATTTGTCTACCTAGTATATGTGTTACCTACAAAGCTGATGGGTCATTAATTGTGTCTTATGTCATTGTCTAAGTACTTGTGCTCCAGTGGTGTTGATTTTACATTATGTGCTGTAGTTTTATAATTATGTGCTGTCATTTCAGAATTTCATACTGTCGTTTTTATTCATTTTGTTTTTTTCATTACATGGTGTGGCGACGACACCCGTTGTTACATGCTGTGGCGACAACCGTTGTTACATGCTGTGGTTTGTGTTGTCCTTATTGTTAAACTATTTCTTGTTACTAACACTCCTCTTACCACACTTGATTGATTTTAACTTTTACCACATTCTTCCTCAAAGTACTGATGATGTGTTCTTCTGATTATCCCTTCCTTGAAATTAATTCTAATGTAGCCTTGATGGTTAAGGTCACTTCTTAAATTGTGTCACGAACAATTAATTGATTTTGATACTGGTAATTTACGATCTGCA

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|F-box

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12937	F-box-like	F-box-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001810	Domain	F-box domain	Interproscan
IPR006553	Repeat	Leucine-rich repeat, cysteine-containing subtype	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR036047	Homologous_superfamily	F-box-like domain superfamily	Interproscan
IPR050648	Family	F-box/Leucine-rich repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13382	MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03875	SKP2, FBXL1; F-box and leucine-rich repeat protein 1 (S-phase kinase-associated protein 2)	-	Ubiquitin mediated proteolysis	ko04120	PMID: 28812709
			FoxO signaling pathway	ko04068	PMID: 28812709
			mTOR signaling pathway	ko04150	PMID: 28812709
			Cell cycle	ko04110	PMID: 28812709
			Pathways in cancer	ko05200	PMID: 28812709
			Viral carcinogenesis	ko05203	PMID: 28812709
			Small cell lung cancer	ko05222	PMID: 28812709
			Herpes simplex infection	ko05168	PMID: 28812709
			Epstein-Barr virus infection	ko05169	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_61340-9.7 global RNA-seq network