Gene detail

Detailed information of Bpl_scaf_60167-0.16 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_60167-0.16	UNCHARACTERIZED	Bpl_scaf_60167	55125	78542	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_60167-0.16

ATTGATTCTCTAACAGTTTGGATAAATAAGCCCCATGTAGTGAACCGTCGTTTGTGTGGTGCAAAGATAAATCATTTTATATTTCTTGAAAAGGAACGATTGTCAGAAAAGCTTACAGAATTATTCCAAATTAATGGTGAAGGTGCTGAAAAATCTAATGACAAAGAAGCTGAACACAGTTTGTTGGAAGTTGAAAATTTACAAGAAATTTCTGAAAGTGAAATTGCAGTTATCACCAGAAATCTTATTTCAAAGCAGGGCAAAAGCAGCAATGATATTACTGAAATAATTGTAGTGGAAGATAAACAAAACATAGTGACAGCTTCCTTCTATCCTGTTCCAGTTAACGACAAATCAATAGATCACACAGACTCATTGTCATACCAGTTGGTTTTTGTACCTGGTTCAGATAAAATTAACAAGATACAATTAAAGAAATTGGTCGATTGCAAACAACCCGAAAAAACTGATCACAGAGGATTTGATTGGATGGTCAACACATTATTACCAAAACTATGCAATTGGAGTACTGAAGCAAAGTTAAAAACATCAGTTACCTCCCTTAGACTAATACCAATAGAAGATTACAGTCAAAAGTACCGATACTTGAAGGAAAAATATGGAAAACAGTTTGTTGAGAATTGGCCAGAAAGTACAGATCCACAGAAATTTGTTTATGAAGATATTGCCATAGCAACATACTTATTGGTATTATGGCAGAAAGAAAGGGAAAAGAAACAGTTGGAATGTCTACAATCTTTTGTTGATTTAGGTTGTGGTAATGGTCTGTTAGTCCATATTTTGTCATCCGAAGGGCATCCTGGTGTTGGACTAGACATTAGAAAAAGAAAAATTTGGGACATGTATGGAAAAGATACAGTTTTAAAGGAAGTAACTATTACACCATCTGCAGAAAATACATTCCCTGAATATGATTGGTTGATTGGTAACCATAGTGATGAATTGACACCATGGATTCCTGTGATATCTGCTAGGTCAAAGTACACCAGTAGATATTTTGTCTTACCATGCTGTCATTATGATTTTGACTGCAAGTTTAGTGGTAAGCAACAAGGACTCAGTAATTACAGAACCTACCTCAACTTTGTCAAAAAGATAGGAGAGGTGTGTGGATTTAAAGTAGAGGAAGATACACTGAGGATACCTTCTACAAAGAGAGTTTGTTTCATTGGTCAGGAAAGAACTTATCTACAGCAAGATGCCGAATTAATAGACGACAAAATATCGGTTTACATTAAAACAAGATCAAAATGTAGCCATCCATCAGATCTCACAGGAACCACATCAATATCTGGAGAAAGCAATTCAAAATATCAAAAACTAGACAATGGACAGAAATGGAGTTCAGAATTTGAACCGAGAGAACAAAGTAAAGAAAAATCACGTAATTGTCAGCACGTTGACAAGGAAGTGAAAAAAGTCATTATAAACGCTGTCTTCAATAAAGTGTTAGAAAGTGACAAATCTGAGATACGACAATTACCTGATGGTAGAACATGGTCTAAAGGAGGTATTGTACCACTAGGAGATGTTGTAAAGTTATTTGATAAAGACATATTAAAACAACTGAAATCAGAATGTGGAGGATTACAAACTTTACTGAAGAATCATAACAGTATATTTCATGTGTCCGGTGGTAATGTACAGTTACGAGACCTGAGTGTGGATGAACCTTACAGTAAAAAATCACAACTGTCGAAAAAAGATAGAAGTCAATACTTTAAGACTTTACCCTGCTGGTTTTATTTACATCATCCTGACGGATGTCCAAGGACACAGGTCACATGTACTTTTGCTCATGGGGAGAGTGACTTAAAGACAAATTTCTGTGATAGTAAAAATATTCCAAAGTTTGAAAAATGTCCAGATGGATGATTTTAATATTTTAAAAAATACATTTTTGTATTTTAAGAAAAATTTATTTGCACATCATTGTTGTGTTTAGTAGCGGCTCTTATAGTATAATTACAGCATCATGTGATTAAGTTTATCATTGACTTTTGACAGGATGGTGGTTTTCTCCGGTTTCCTCCACCAATATTAAAACTGACCACCACGATATAACTGAAATATTGTTGAAAGTGGCGTTAAACACCAT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07757	AdoMet_MTase	Predicted AdoMet-dependent methyltransferase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000571	Domain	Zinc finger, CCCH-type	Interproscan
IPR011671	Family	tRNA (uracil-O(2)-)-methyltransferase	Interproscan
IPR029063	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21210	UNCHARACTERIZED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008168	Molecular Function	methyltransferase activity	Interproscan
GO:0016300	Molecular Function	tRNA (uridine) methyltransferase activity	Interproscan
GO:0030488	Biological Process	tRNA methylation	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15447	TRM44, METTL19; tRNASer (uridine44-2'-O)-methyltransferase	EC:2.1.1.211	Transfer RNA biogenesis	ko03016	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_60167-0.16 global RNA-seq network