Gene detail

Detailed information of Bpl_scaf_59830-9.5 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_59830-9.5	ALKALINE CERAMIDASE 3	Bpl_scaf_59830	879181	912880	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_59830-9.5

TTCCGGTCTAAATTTGTGTTATCTAAACAAACCAATTTAAATTAGGAAGTTATGCGCAGTTGAATGGTTCAGTAACCTGACTTATCTCTCTGATTTAACATGTGATCGAACGATCGTGTTTATTTATTTATTTTCTTTTTACAATATGACTGGAAACGTGGAATGACGCGCAGTGTAAATATATAAGATAAACAGATAAAAATGGCCCCACGATTTATTGACGGATTTTGGGGCTATCCAACTGCCACAATAGACTGGTGTGAAGAAAATTACACTGTAACGAAATATATAGCTGAATTCTGGAATACTATAAGCAATGTAATTTTCATCATACCATCTCTAGCTGCCCTGTATTTTGCTTTTATTGATCACATGGAGTGCAGATATAAGTGGTGTAATGCTTCAGTATTTACTGTTGGACTTGGATCCTTGTGCTTTCATATGACATTGCTATATAGTATGCAGTTATTTGATGAACTGCCTATGATTTATGGATCTGCATTTCTTATATATTCACATTTAGAAGTAGACAAACCTCGCTTTCATCACAATAAACCATTGAAGATAGGCTTATTACTTTATTGCATTTTTGTAACTGCTGTGTATTTACAGACCAAAAATGTATTATTCTTTCAGTGTTCATATCTTACTGTTGTGGTATCCATGTTGATGGTTTGTGTTTATAATTTTAGAAAATTTAAAGAAGCTAGAAATATATTCATAGCTGCCATTCTAACTTATGGTTCAGGTTCCCTTATGTGGACAATAGACCAACACTTTTGCCACAGCCTCAAGTTTTTCAGAAGTAACATGTTAGGACCATTTTCACCTCTATTTGAGTTACATGCATGGTGGCATCTATTAGCAGGCACAGGAACATATCTTTCTGTTTTATATAGTACCTATTTAAGGTACTTAGTCTTAGGAAGCAAACCAGAAATTAAGTATTGGAAAAGGGTGTGGCCATATATTAGGATAACCAATGGCAAGGCAAACACCTGATGTACAAGGATTGAATGGTAGTCAGTACTAGAACTTTTGTTAGAATATATATTTTTATGTATTGATTTGTATACATACGATAAACCATTTTCAGAATTTAGGCCAATTTCTTAATTGTAGTGCTGTGGACAATATGCTAATTATCCCTATAGTATCATGGTGTTCTATGATATCGCGGTACTTAATGTTTAACATCTGTGTAACGTAACTAGTTTTCGGAATTAATCCAAAAATGTTATATTTTATTCCCCGGTATAAAAACCTATTTTCCCCCACAATTCGTGTTATTCTTTGAATTTGTTTAAAAATATGTTGCCACTTTTCCTTATGGCAACGCCGATGTACCTCGCAAAAATGGTTTCCTATGATATTGCGGTAATTGCAAAATTAATGTTATGGGATACAGTGTTTGACAAATCAAGGTGAATATCTGGCAAACTCATACCATAAAGAAAATCTTGATAATTTATCACATTTAATAAATAATGCGTAAAGTTTCTTTGAAATAACAAATGTAACGAAGTTGAGTCAATTTGATGTAACGTTATGTTGGTTAGTCTAGCTTACACGCAATGTGGACACTTAAATTTGTCGCCGCATCTGATAACCCTTACATTCGAACAATATATGAGGTATGTCCAGTGTGAACAAGAGTCACATTTTCCTCATTTGGTGATTGTGATAAAGTCACAATTACTAAGTCCATCTGGCCTACGTTTATGACAGATGCAACAAAGTACCAAAAATATGTTTTCATACCTTAATTTTTCTATCAACTTTGTCGGTCTAGAAAGTAAAAAAAAATAGCACCAAAAATCCCAAATTGGGTTGAAATGAAATGTAAACAAATGGACAACATTTCTAAAAAAAAAAATAGCAGACAACTTATGACAACTATGGTTTAATTATTGGACATTTTACAAAGCATGATATCAGGGGTAAAATAAAAATGTCCGCTATTTCTAAGGAAAAGATGAAAATACGTGTACTTACCAAAATTCTAGACATTTGGACAGAATGACCAGACGTTCCGATAAATGTGACTGTTGTGTTTATGAATATATAAATAGAATGGCCGTAGCAGGTGGCGCTGCAGTGCATAGGAACAGAGAAAATAAATACTGTGATACCGAAGGGAGTATACACATAGACATGTGGTTCAGAAATACAGTTTACACACAATGCACATTTTATTGCCATTTTTCAAACAAAACTATTTTTGAAGATGTAAATATCATCAGTATCAAGATTATTTCTTATTTTTACCAAAACTTGTTATGTCAATTTTGTTGTTAGTATCAATTTAATTAAGTTTTAGAACATGATAATAATATCATGAGAAATAGAACCGTTCATATGAAATTTAATATCTCAACTTGCAAATTATGAGATTCCATTTCACTATAGACCCATTTCATGATTTTGTGGAATCTTGCATATTCATTATTGGCATATGCACTACTTTTATGTCACAAGTAATTCATATTTTAGTGCCGTAGATTGACCAAACAAAGTGAAGCAAACATCTTGTTAGTTTTCTGTTAGCTTTGTTTTTGTGTCTTGTGGCCAATGTTGTCTGTGTTTCTAGATAGTCCATTGTTTTGTTTTTCTTTGTTTTGTATCGTGTGGCCAATGTTGTCTGTGTTTCTAGATTGTCCATTGTTTATTGTCCCTTTCAGTTTTCTCTAGCATATATTTACATCATACATTGTACTTAGTGATCATGTGTTGCAGTGTGCATTGCTGATGAAATTCAATCAATTTAAATGAAACATATATTTTCCCCCA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05875	Ceramidase	Ceramidase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008901	Family	Alkaline ceramidase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46187	ALKALINE CERAMIDASE 3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006672	Biological Process	ceramide metabolic process	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0016811	Molecular Function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	Interproscan
GO:0030176	Cellular Component	obsolete integral component of endoplasmic reticulum membrane	Interproscan
GO:0070774	Molecular Function	obsolete phytoceramidase activity	Interproscan
GO:0071602	Biological Process	phytosphingosine biosynthetic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K04711	ACER3, YDC1; dihydroceramidase	EC:3.5.1.-	Sphingolipid metabolism	ko00600	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_59830-9.5 global RNA-seq network