Gene detail

Detailed information of Bpl_scaf_58896-13.1 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_58896-13.1	INNER MEMBRANE TRANSPORTER YGJI-RELATED	Bpl_scaf_58896	1285263	1299801	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_58896-13.1

ATGACGGCAGTGACCCGGAAGAAGAAGGTTACGGAAGACATGTACGAGACGCCATTAAAACGATGTCTCAGCACATTTGATCTCACACTATTAGGGATTGGTCATATGATAGGCGCTGGAATCTATGTCTTGACCGGAACCGTAGTAAAAGAGTTAGCAGGACCATCTGCCGTTCTCTCTTACCTTTTCGCTGGGTTTGTAGCTCTATTAGCCGCTCTATGTTATGCAGAGTTTGGAGCAAAAGTGCCAAAAGCCGGTTCAGCGTATTCATATATATACGTAACGATTGGGGAGCTTATGGGCTTCATCATCGGCTGGAATATTATCTTGGAACATTTACTGGGGGCTTCATCTGTTGCTCGAGCATGGAGTGGTGCCATTGATTCTTTATTTGACGGAGCAATAAGAAACGGGACTATAGAGTATATCGGACACTTAGGAAAGGATTCGAAGTGGATCTCCGATTATCCCGATTTTATAGCTTTTGGGATATCAATTATTATATTTATTGTTATTGCAACTGGGACCAAATTCACAATGAACTTTAATAGCGTTTTTACGTTAATAAATATAATTGTCATTATATTTTTGATATGTGCAGGATTTTACTATGCGAATCTTGCAAATTGGACTGACCCCAAAAAGGGTGGGTTTTTCCCAAATGGATTTGGTGGAACGTTAAGTGGTGCTGCTACATGCTTTTTCGCCTATATTGGCTTTGAGGGTATTGCAGTGGCCGGAGAAGAAGCTAGGAAACCAGAGAAATCCATTCCATTCGGAACAGTTATGGCTTTATCCATTGTATCGTTGATGTACATTTTAGTAACAATTTCATTAACACTTATGGTACCGTATGATGAAGTGTCAACTACAGCTGCTTTTCCGATGGCATTTGCAACGCGTGGTGCACACTGGATAAAAGTAATTGTGGCCATCGGAACACTTTTTGGAATAACAACCTCATTGCTTGGATCAGCATTTTCCGTATCAAGAGCTGTATACGCTATGGCGTCTGACGGTATTTTATTTTCATTTTTAGGATACGTTCATCCTCGGACAAAAACTCCGATAATAGGAATTGCAGTTTTTGGACTTTTGTCAGCATTCATGTCTCTCTTGTTTGAAATACAAACTTTAGTAGAATTCATGTCTATCGGAACTCTTCTAGCTTATACGATAGTTGCAGCTGCTGTCATAATCGTTCGTTATCAATCCGTAGCAGACTGTCAGTTTAAGCTAAAAGCGGAAGAGGGAGTAGATGAAGCTACTTCCGGTACAACAGAAGAAAGTGCCATAATCAAGAAATCAAAAAGTCATGACGATTTCGGAAAATTGAAAGAAAAACTCCGAGACCTTCCTATTTTGAAGTCCGTTCCAGCGGGTAGAGCAGCGCTTTATGCCACTTACACAATGATTGTTTTTATAGTCTGTTTCTGTTTAATCCTGATAATTGGATTTAGTCATCTCAGAGACGGTGCATGGTGGGCAATCATATTGGCGATCTTCTTCTCTTCTGGGATGGTGTTCTGCTACCTCATTATGATCGCTCATGAGAAAAATGATGCATTTTTAACATTTCAGATGCCGTTTGTACCATTAATACCTTGCCTCAGATTAGTTCTGTATATTGTCTACGGTGTATGGCATAGCAAGGAGAGGGAGCCACCAAAACTGTACGATCAAATGATAAACTACACAGGGGATGCAGAATTAACAGAATCCATGAAAAAGTTAGAGGAGGAGGTCAGAGAACAGCAACCTAAGAGAAATGCAGACGAATCTTATATGCAAGATTCCTATGGCTCTATGTAGTATCTTTTTTTCTGTTGGGTTCATGGTAAATGGCAAGTCATAGTTAGTTATTTTTATAACCCTAGGGCATTTACATTTTTCATGATCTAACAAATTATCCTGTAATTGTAATTTTGTGCAATTGTGTAAGTTAGGCTAGTCAAAGAACGTAGATATTCAACTTAGTGTTCACAGTGCGTTTCTGGAATATAATAACCGTTATCAGATACGTACATAGTTGTTTATCAGGTACGTACATAGTTGTTTATCAGGTACGTACATAGTTGTTTATCTCCATAACTCTCGGACATTTAGATTGTTATGGTCTAACAATGTATCAGGTTATTGTAGTATTGTACAATTGTATGTAAGTTAGGC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13520	AA_permease_2	Amino acid permease	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002293	Family	Amino acid/polyamine transporter I	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43243	INNER MEMBRANE TRANSPORTER YGJI-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0006865	Biological Process	amino acid transport	Interproscan
GO:0015171	Molecular Function	amino acid transmembrane transporter activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0022857	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13866	SLC7A4; solute carrier family 7 (cationic amino acid transporter), member 4	-	Transporters	ko02000	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_58896-13.1 global RNA-seq network