| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| Bpl_scaf_58886-2.17 | CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 | Bpl_scaf_58886 | 253453 | 283417 | - |
| CDS | |||||
| Bpl_scaf_58886-2.17 | |||||
| Transcript |
| Bpl_scaf_58886-2.17 |
| Protein |
| Bpl_scaf_58886-2.17 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00004 | AAA | ATPase family associated with various cellular activities (AAA) | Domain | Interproscan |
| PF00533 | BRCT | BRCA1 C Terminus (BRCT) domain | Family | Interproscan |
| PF08519 | RFC1 | Replication factor RFC1 C terminal domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001357 | Domain | BRCT domain | Interproscan |
| IPR003593 | Domain | AAA+ ATPase domain | Interproscan |
| IPR003959 | Domain | ATPase, AAA-type, core | Interproscan |
| IPR008921 | Homologous_superfamily | DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal | Interproscan |
| IPR012178 | Family | Replication factor C subunit 1 | Interproscan |
| IPR013725 | Domain | DNA replication factor RFC1, C-terminal | Interproscan |
| IPR027417 | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR036420 | Homologous_superfamily | BRCT domain superfamily | Interproscan |
| IPR047854 | Domain | Replication factor C, lid domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR23389 | CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0003677 | Molecular Function | DNA binding | Interproscan |
| GO:0003689 | Molecular Function | DNA clamp loader activity | Interproscan |
| GO:0005524 | Molecular Function | ATP binding | Interproscan |
| GO:0005634 | Cellular Component | nucleus | Interproscan |
| GO:0005663 | Cellular Component | DNA replication factor C complex | Interproscan |
| GO:0006260 | Biological Process | DNA replication | Interproscan |
| GO:0006281 | Biological Process | DNA repair | Interproscan |
| GO:0016887 | Molecular Function | ATP hydrolysis activity | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K10754 | RFC1; replication factor C subunit 1 | - | DNA replication | ko03030 | PMID: 28812709 |
| Nucleotide excision repair | ko03420 | PMID: 28812709 | |||
| Mismatch repair | ko03430 | PMID: 28812709 |
| 1. Expression trend for Bpl_scaf_58886-2.17 global RNA-seq network |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-Yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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