Gene detail

Detailed information of Bpl_scaf_58743-0.14 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_58743-0.14	THREONINE DEHYDRATASE, MITOCHONDRIAL-RELATED	Bpl_scaf_58743	57746	74168	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_58743-0.14

ATGATTCCGCGCGGACAGTCGAAAAAAGAAAATACATCACCGCCTAAAAAGGCAAGAAAAGTGATAGACACACCTGTAAATGGAGATGTCACATCTGATAGTGATTCAAGTTTGAAAAAAGATCTTTCTGATGAACCACTTCATGATAGATTTTGTGACCCTGCTAATCCAAAGAAGATCCAGTTTCAGGACAGATCAAGATTATCTAGTCAAGTAGGAATGGATTTGTATTTCAAGAAAGAATTCTTACAGTTTACAGGAAGTTTTAAAGAAAGGGGTGCAAGATATGCATTAATGATGCTGTCACCGGAACAAAAGAAGATTGGAGTTATTGCTGCCAGTGCAGGAAACCATGCTTTAGCTTTGTGTTACCATGGTGCTGACCTTGGCATCCCAATAACAGTTGTCATGCCACTTATTGCACCATTAATGAAAGTACAGAATTGTAAAACTTATGGTGCTGAAGTTATTATACATGGAAAAGGCATATTTGAGTCAAGAGAATATGCCATGAGATTGGGGAAACAGAAAAATCTGTTGTACATCAATGGATATGATCATCCTGATATAATAGCAGGGCAGGGTACAATGGGTCTAGAGATTTTAGAACAGGTACCAGATCTAGATGCCTGTATTATTCCTGTAGGAGGTGGAGGACTACTGGCAGGGACTGCACTGGCCATCAAAAATCTAAAACCAGATGTTCAGGTTATAGGAGTTGAATCAGAGAATTGTCCTAGTTTTTCGGAAGCTTTAAAGGCTGGCAGAGCTGTCTATACACAATCTTTGTCAACATTAGCTGATGGTCTTGCTGTGCCAGTTGTAGGAGTAAATGCTTTAGAAACAGCAAAAGATTATATAGATAAAATGGTCATAGTAAAAGAAGAATCTATAGCATTGTCTATATTAAGACTGGTGGAACTAGAGAAAGCTGTGGTAGAGGGTGCTGGTGCTGTAGGATTAGCTGCTGTAATTGAGGGACTGTTACCAGAACTTAAAAATAAAAAGGTGGTAATACCACTATGTGGGGGCAACATAGACACAACAATACTTGGGAGAGCTATAGAGAGAGGCTTGGCTGTAGATGGTAGATTAGTACGATTTGTTGTTACTGTTAGTGACAGACCAGGAGGCATAGCTGAACTGGCTAAATTACTAGCCAATATGGGTGGCAGCATTAAAGATATATTTCATGAAAGAGCTTGGTTGAAATCAGATGTATTTTCAGTGCAGGTGAAAGTCGTTGCCGAGACACGTGGCCAGGAACACACGGATGAAATTTATACAGCTTTAAAAGCTCATTATAAACAAGTTTCTACAAATTCTTGTGTTTGAAAAAAAAACATATGGAGAACCATGACCTTGTAATTGATACATGGGAACATGTGCAATAAATACCAATGCATTGTAATGTGCAATAAAAATTTACATTGATAGATGCAATAATGACGAATACATTGAAAGGTGCAATAAAGACCAATGCATTGTAAGGTGTAATGAAAAGATTACATTGAATCAAGACCAATATCTTAAAATTTAAATCAGCATGTATATATATTTGTTTGTGATATTTGTATGTTTTTCATAGGAAACAGATTTAAAAAAAGCATTTGCTTGTTTCTGAATCCTATTATAGAATTGCTATTGTTCTGTTTATATATGTCAGTTATACCAATAAATATATTGAAAGGTGCTATAACGACAAATACTTAAAGGTACTGTGAGTTGTTGGTGACCCGAATGAATTTTACAAGATGGAGACAGTGCGATGGTTTAGCTGCACAAACAGTTTCAATTTATGGTGCACATATCATTTTATTTGTCACAGATTTTTTTTTAGATATAATGAAATATATGTTATTGACATGTAATTTTCAGGTAAAAGTTGTAGCTGAAACGAGAGGTCAAGAACATGCAGATGAAATCCATGCAGCTTTAAAAGCCAATTATAAACAAGTTTCCTGGGGACCTGTACATTTTTAGCTTTTTTTTAAATATTTTGTTTGTTTTGAAACAATCAGGTTTTATAAGCTTTTTTTCCCTTTGTTATTTCAATATGATATTGTTTTGTTTATTTTAGATATGTTTTTTTTTATTTGTGTAACTGTACATTCAATATCACTATATTATCTTTCTTATTAGTAATGTTTCACAAATACACATGTATATTTATCAATATTGTTCAAATATTTGTTTACTGATATGTAACGTGAATGACAATTTTTTTTAATGTATTCATATGAATTTATTGTATTGATATTTATCATGTTATTTTTCATTTTTAATATGTACTTTGTTTAACATAGACTTTGGTGCTTAAAATCACAGATTTATCTTACAAGTAGGTGACAGATGATATTAGTGGTGGCTTATCTAGTGGTGATGACAATCAATCAATTTTAATCCATATTATTTTAGGATTTACAGATGGATATATATCATTATACAATGTATTGACAATATTATATTTTATTTTTTATTTCGCTGAGTTAAGTACCATTTTTCTTTCACCTAGAAATTTCAGTATTTCACTGTCATCCATGCAATAAATTAATATATTCATGTACAATGGAACCTGTCTAATCCAACACACCAAGGGACCAAGGAAATATGTTGGATTGCACAGGTTCCATTGTGTATGTTGTATCATTGTTGCTGTCAGAGATTTAATGTATGTATAGTTTTCTTTCTTTGTATGCTCTGTATTTAGTACATTTTTTTTACCTTTCTTTATTTGTTAACTTTTTTATCTTTTTTTTCTTTATTGTCGGTGCATTTTGTTATTTTTTTCCACGCATAATCATGTTTGATTTTTCTTTTCTTGTATGCTGGGTATTCAGTAGTTTTTTTTGGTCAGATGACCCAAACAAGAGAGAGCCTAGTGAGCTTCTTGTATCACTAGACATCCATCATCTGTTGTCATTGACTGTTTTCACATTTTGATCTCCTGCAAAACTGTTCAACTAAACAGAACCAAACTTTGGAGGAACAATCCTTAATAAGAGGAGATTCAGAGTAAAGTTTGTACACATTTAAGCCAAATTGTATATGGGATTCAGACCCTTGTGTTTTAAAGATTAATATAAGTTGTTAATGGGAAAATAAACAAAGAACCAAGAATGGAGATGCAATTGTATTTGGAATGAAGCAGCATTACAATGTGAAGAATCAATTCTGTACCAATAAAGGTTCCTTGATCTATTAGGTCCTGGGGGGGGGGGACATAATTTAACATATACCATGATAGACAATACAATGATATTTTACCCATGTGAGTGATACAGACACATGGGAGCCTCTGGTTTCAACTTGTACATTTTACTTTCTTTATTGCCTGGACATTATATAAATTGTTCCCTTATCTGTATCTATGAATTGTTTGTTTGATATGTTAAGAATTACTCGAGATATTTATTTTTTTAAATGCAAAATATGTTTAAGTATTGATAATAAAAAGCCAAAAAAACAAAACAATATAAGTATCAGATTAATGTACCAGGTTATTGATGTGTAGATTAATGTACCAGGTTATTGATGTGTAGATTAATGTCCCAGGTTATTGATGTGTAGTAAGTGTTCAAATTGTATATATTTATAGAATAATCTTGATCATTTCATTAAGTTTATAATTACTGACGACGGCTTTAATATATATTTAAACAGGCCAGAAACAGACATATTGTATTGTAATTGTAAATGATATGTCTGTTATGTGAGCATTTACAAAAATCATGACAACGAACCATTTTATAAACTTGTTTTTATACATGTAGGTGCATTAATTATTTGCATTATATTGCTATGGTGTATATTATTTCTTTTGTATGAAATATATGTTTATTTTTTGATATTTTAAGTTTCTTTGTTTATTAACTGTTATTATATATATAGATGGCTGTGAAATACCTGAATTACTCACTGAAGAAAGTCTGATGTAAACAATTCTCTCTTTTCATAATTTCTTCATTTTTAGTTTACCTGACCCAAAGGGTCATGTGAGCTATTGCCATCACTTTTCGTCCGTCGTCTGTCGTCCGTCCGTCAACATTTCACATTTTAATCTTCTCCTCAGAAACTACTGGGCCAATTGCAACCAAATTTTGGTGGAATGGTCCTTGGATGGCCCCCTTCCAAAATTGTTTAGTTTAAATTGCAAAAATATGCAGTATGTCAAGATCTACCTACCCTGCAATTTTGAAGTAAATCCCATAACCCATTTAT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00291	PALP	Pyridoxal-phosphate dependent enzyme	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001926	Domain	Tryptophan synthase beta chain-like, PALP domain	Interproscan
IPR005789	Family	Threonine dehydratase, catabolic	Interproscan
IPR036052	Homologous_superfamily	Tryptophan synthase beta chain-like, PALP domain superfamily	Interproscan
IPR044561	Domain	L-threonine ammonia-lyase, ACT domain	Interproscan
IPR050147	Family	Serine/Threonine Dehydratase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48078	THREONINE DEHYDRATASE, MITOCHONDRIAL-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003941	Molecular Function	L-serine ammonia-lyase activity	Interproscan
GO:0004794	Molecular Function	threonine deaminase activity	Interproscan
GO:0006565	Biological Process	L-serine catabolic process	Interproscan
GO:0006567	Biological Process	threonine catabolic process	Interproscan
GO:0009097	Biological Process	isoleucine biosynthetic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K01754	E4.3.1.19, ilvA, tdcB; threonine dehydratase	EC:4.3.1.19	Carbon metabolism	ko01200	PMID: 28812709
			Biosynthesis of amino acids	ko01230	PMID: 28812709
			Glycine, serine and threonine metabolism	ko00260	PMID: 28812709
			Valine, leucine and isoleucine biosynthesis	ko00290	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_58743-0.14 global RNA-seq network