Gene detail

Detailed information of Bpl_scaf_58133-0.5 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_58133-0.5	TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT EPSILON	Bpl_scaf_58133	14396	52611	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_58133-0.5

ATGTCGCGAAAAGGAAAACAACGTGGGATAGACATCAAACAAGAAGATGTACTACAAGCTGTTGTTATTGCAGATACATTCAATGTTCGATTTGCCCCCATAACTGACAAGAAACCAAGGACATTGTTATCATTGGTTAATGTTCCTGTGTTAGACTATACCTTGGAGTTCCTAGCAGCCTCTGGAATTCAAGAAATCTTTGTGTTTTGTTGTCACCTAGCTGACCAGATCAGGACACATATACGAAATTCTAAATGGAGTGAGAGTTCTGCACCATGTACTGTAACACCTATATTATCTGAGGGATGTTTGTCTATGGGGGATGCTATGAGGGAAATTGATGATAAATCACTCATCCGTAGTGACTTTGTCCTAGTTTATGGAGACATTGTGGCTAACCTTGACCTCCAGTCCATCATACAAGAACACAAGAAGAAAAGAGAAAACGACAAAAATGCTGTTATGACTGTAGTAATGAAGAAAGCACCCCCTGGACATTGTTCTAGGTGTCGTGAAGATGATGTACTACTAGCTATTGACAGCTCAAATAACCGTATTCTACATTACCTTAAAACAGGGAACCAGAAGAAACTAGAACTTCCTGTGGAAGTTTTAACAGAACATAAGAATGTCCACCTACATTATGACCTATTAGACTGTCAGATTAGTGTGTGTTCTCCACAGGTACCAGCCTTATTTAAAGACAACTTTGATTACCTCACCAGAGATGATTTTATTAAGGGAATTCTAATGACTGAAGACGTCATGGGTAATACTATTTTTTCAAAGATTGTGAGTGATAAATATGCAGCTAGAGTTTCTAACTTACAGATGTATGACATAGTCAGCCGGGACATAATGAGCAGATGGACCTATCCATTGGTTCCTGATAATAGTATAAATAACAATGATAACAGTGTATCATATGGTCGTCACAACGTTTATCTTAGTAAGGATGTAACATTAGCCAGAGGTTGTGTGTTGGAAGAAAATGTAGTGGTTGGTAGTGGATCTTCCATTGGTTGTAATACAGTCATATCACAATCTGTTATTGGCAACAATTGTAAAATAGGAGAAAATGTAGAGATAACAGGATCGTATATATGGGATGATGTTGTGATAGAGGACAATTGTGTGATAAAAACCTCAATCATATGTGATAATGTTGTTATTTATGAGGGAGTAACAGTCAATTTAGGCTCTGTTATAGCCTGGGATGTAAAAGTTGGTCCTGGGGTGAGTTTGCCACCGAGTTGTATGTTACAGTCACACCCATGTGAGGATGAGGATGGATTCGGTGATGACCTTCCTGAGGCTGATCAAGGTCAAACTATAGAGTCTTCACTAGATTATGGTGCCAAAAGTAAAGCCTATGAATATAAGGCCCCTTGTGATAGCGATGATGAAGATGATGAACTTGTGAAGGACATATGGGGCCTCACCATTCAGTCAGATGATGATCTTAGTAGTATAACTTCACATAAAAGTGATGAATTTTCAGACGAGGAGGAGGAAATACAAGATGAAACCATAATGTTTTATAATGAGATGATTGATCAGCTAAGAAGATCTGAAAATGAAAATATAAGTAATGAAAATATGATTCTGGAAATAAATGGTCTAAAGCATGCATGTAATATAGCAATAAAAGATTTACATGGAATGGTTTTAAAATCGTTGATAGATATACCAGTAACAGACAATCCTGATTTACAAGGACAGCAGCTGTTAGTTCCTATTAAAAAGCATTTAACCAAACATATTTCCTTACTGAAGAATTATATAAAGCCAGACTCTTCAGAACCTCAAATGGATGGATTATTGGCTTTAGAGGAATTTAGCTTACAAGAATCAAGAATAAGTACAATATTAGTCAAGATATTACATGTGTTATATGATATGGATGTTCTTCATGAACAAGTATTATTTAAATGGCATCGAACTATACCACAAACAGAGGATGTACCAGAGAGGGAGAGGTTAAGGAAACAGGTGGAGCCACTTATAAAATGGCTACAAGAAGCAGAAGAGGAATCATCTGATGAAGACTAG

Transcript

Bpl_scaf_58133-0.5

ACCGTTTTCACCGGAAGATGAATAAAATTCAAAACAAACAAAATGTCGCGAAAAGGAAAACAACGTGGGATAGACATCAAACAAGAAGATGTACTACAAGCTGTTGTTATTGCAGATACATTCAATGTTCGATTTGCCCCCATAACTGACAAGAAACCAAGGACATTGTTATCATTGGTTAATGTTCCTGTGTTAGACTATACCTTGGAGTTCCTAGCAGCCTCTGGAATTCAAGAAATCTTTGTGTTTTGTTGTCACCTAGCTGACCAGATCAGGACACATATACGAAATTCTAAATGGAGTGAGAGTTCTGCACCATGTACTGTAACACCTATATTATCTGAGGGATGTTTGTCTATGGGGGATGCTATGAGGGAAATTGATGATAAATCACTCATCCGTAGTGACTTTGTCCTAGTTTATGGAGACATTGTGGCTAACCTTGACCTCCAGTCCATCATACAAGAACACAAGAAGAAAAGAGAAAACGACAAAAATGCTGTTATGACTGTAGTAATGAAGAAAGCACCCCCTGGACATTGTTCTAGGTGTCGTGAAGATGATGTACTACTAGCTATTGACAGCTCAAATAACCGTATTCTACATTACCTTAAAACAGGGAACCAGAAGAAACTAGAACTTCCTGTGGAAGTTTTAACAGAACATAAGAATGTCCACCTACATTATGACCTATTAGACTGTCAGATTAGTGTGTGTTCTCCACAGGTACCAGCCTTATTTAAAGACAACTTTGATTACCTCACCAGAGATGATTTTATTAAGGGAATTCTAATGACTGAAGACGTCATGGGTAATACTATTTTTTCAAAGATTGTGAGTGATAAATATGCAGCTAGAGTTTCTAACTTACAGATGTATGACATAGTCAGCCGGGACATAATGAGCAGATGGACCTATCCATTGGTTCCTGATAATAGTATAAATAACAATGATAACAGTGTATCATATGGTCGTCACAACGTTTATCTTAGTAAGGATGTAACATTAGCCAGAGGTTGTGTGTTGGAAGAAAATGTAGTGGTTGGTAGTGGATCTTCCATTGGTTGTAATACAGTCATATCACAATCTGTTATTGGCAACAATTGTAAAATAGGAGAAAATGTAGAGATAACAGGATCGTATATATGGGATGATGTTGTGATAGAGGACAATTGTGTGATAAAAACCTCAATCATATGTGATAATGTTGTTATTTATGAGGGAGTAACAGTCAATTTAGGCTCTGTTATAGCCTGGGATGTAAAAGTTGGTCCTGGGGTGAGTTTGCCACCGAGTTGTATGTTACAGTCACACCCATGTGAGGATGAGGATGGATTCGGTGATGACCTTCCTGAGGCTGATCAAGGTCAAACTATAGAGTCTTCACTAGATTATGGTGCCAAAAGTAAAGCCTATGAATATAAGGCCCCTTGTGATAGCGATGATGAAGATGATGAACTTGTGAAGGACATATGGGGCCTCACCATTCAGTCAGATGATGATCTTAGTAGTATAACTTCACATAAAAGTGATGAATTTTCAGACGAGGAGGAGGAAATACAAGATGAAACCATAATGTTTTATAATGAGATGATTGATCAGCTAAGAAGATCTGAAAATGAAAATATAAGTAATGAAAATATGATTCTGGAAATAAATGGTCTAAAGCATGCATGTAATATAGCAATAAAAGATTTACATGGAATGGTTTTAAAATCGTTGATAGATATACCAGTAACAGACAATCCTGATTTACAAGGACAGCAGCTGTTAGTTCCTATTAAAAAGCATTTAACCAAACATATTTCCTTACTGAAGAATTATATAAAGCCAGACTCTTCAGAACCTCAAATGGATGGATTATTGGCTTTAGAGGAATTTAGCTTACAAGAATCAAGAATAAGTACAATATTAGTCAAGATATTACATGTGTTATATGATATGGATGTTCTTCATGAACAAGTATTATTTAAATGGCATCGAACTATACCACAAACAGAGGATGTACCAGAGAGGGAGAGGTTAAGGAAACAGGTGGAGCCACTTATAAAATGGCTACAAGAAGCAGAAGAGGAATCATCTGATGAAGACTAGACAAAAATGGCATCTTAGTTGGAAACTTTTTGTTGTTGAAAACTTTACAAATGTAATGATCTACATTTTTGTTTGGATTAGTCTTAAAAAAATATGACACGGTGTGATGTAAAGAAAAAGTGTTTGATATCCGTGTTTATTACAGGAATGGTTATAAAAGTTAATGTGAGCCCGTT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00483	NTP_transferase	Nucleotidyl transferase	Family	Interproscan
PF02020	W2	eIF4-gamma/eIF5/eIF2-epsilon	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003307	Domain	W2 domain	Interproscan
IPR005835	Domain	Nucleotidyl transferase domain	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR029044	Homologous_superfamily	Nucleotide-diphospho-sugar transferases	Interproscan
IPR035543	Domain	Translation initiation factor eIF-2B subunit epsilon, N-terminal	Interproscan
IPR044123	Domain	Translation initiation factor eIF-2B subunit epsilon, W2 domain	Interproscan
IPR051956	Family	eIF2B Complex Subunit Epsilon	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45887	TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT EPSILON	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003743	Molecular Function	translation initiation factor activity	Interproscan
GO:0005085	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005851	Cellular Component	eukaryotic translation initiation factor 2B complex	Interproscan
GO:0009058	Biological Process	biosynthetic process	Interproscan
GO:0031369	Molecular Function	translation initiation factor binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03240	EIF2B5; translation initiation factor eIF-2B subunit epsilon	-	RNA transport	ko03013	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_58133-0.5 global RNA-seq network