| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| Bpl_scaf_57647-0.14 | COLLAGEN ALPHA | Bpl_scaf_57647 | 9197 | 16372 | + |
| CDS | |||||
| Bpl_scaf_57647-0.14 | |||||
| Transcript |
| Bpl_scaf_57647-0.14 |
| Protein |
| Bpl_scaf_57647-0.14 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00059 | Lectin_C | Lectin C-type domain | Domain | Interproscan |
| PF01391 | Collagen | Collagen triple helix repeat (20 copies) | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001304 | Domain | C-type lectin-like | Interproscan |
| IPR008160 | Repeat | Collagen triple helix repeat | Interproscan |
| IPR016186 | Homologous_superfamily | C-type lectin-like/link domain superfamily | Interproscan |
| IPR016187 | Homologous_superfamily | C-type lectin fold | Interproscan |
| IPR050149 | Family | Collagen superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR24023 | COLLAGEN ALPHA | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0005615 | Cellular Component | extracellular space | Interproscan |
| GO:0031012 | Cellular Component | extracellular matrix | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K19721 | COL5AS; collagen, type V/XI/XXIV/XXVII, alpha | - | Protein digestion and absorption | ko04974 | PMID: 28812709 |
| 1. Expression trend for Bpl_scaf_57647-0.14 global RNA-seq network |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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