| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| Bpl_scaf_57484-12.4 | DNA REPAIR/RNA PROCESSING CPSF FAMILY | Bpl_scaf_57484 | 1261754 | 1285366 | - |
| CDS | |||||
| Bpl_scaf_57484-12.4 | |||||
| Transcript |
| Bpl_scaf_57484-12.4 |
| Protein |
| Bpl_scaf_57484-12.4 |
| Gene family | Subfamily |
|---|---|
| Ubiquitin Family | E3|E3 adaptor Cullin RING|DDB1 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF03178 | CPSF_A | CPSF A subunit region | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR004871 | Domain | Cleavage/polyadenylation specificity factor, A subunit, C-terminal | Interproscan |
| IPR015943 | Homologous_superfamily | WD40/YVTN repeat-like-containing domain superfamily | Interproscan |
| IPR050358 | Family | RSE1/DDB1/CFT1/CPSF1 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10644 | DNA REPAIR/RNA PROCESSING CPSF FAMILY | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding | Interproscan |
| GO:0005515 | Molecular Function | protein binding | Interproscan |
| GO:0005634 | Cellular Component | nucleus | Interproscan |
| GO:0005847 | Cellular Component | mRNA cleavage and polyadenylation specificity factor complex | Interproscan |
| GO:0006378 | Biological Process | obsolete mRNA polyadenylation | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K14401 | CPSF1, CFT1; cleavage and polyadenylation specificity factor subunit 1 | - | mRNA surveillance pathway | ko03015 | PMID: 28812709 |
| 1. Expression trend for Bpl_scaf_57484-12.4 global RNA-seq network |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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