Gene detail

Detailed information of Bpl_scaf_57259-3.19 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_57259-3.19	GENERAL TRANSCRIPTION FACTOR IIIC, POLYPEPTIDE 5	Bpl_scaf_57259	360263	388382	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_57259-3.19

GATTAATGCACATTGGAGGGAGAAAATGAAATCCGTTCAAAATGTGGTCAAACGGAGAAAAATCAATTAACGTTCCTTTTAATCACAATAGATTTGTTTGTGTTGATTATCCAGGTGTTGTAAAAAATGTTGATAAAGCATTGAAATCTATAGGAGGAACTGAAAATGTCGCAAAGGTTTACTCTCAACCAAACAAAAGACTGTCTGTTAATTGGAGACCGGATGATGCATTTTGTAAACCAGCTTTTGGAGAGAGATGTTCAACAACAAATTTGTTGATGAAAGTCAAAAGAAGACCAAGAAAGGGAGATAATTCTAAATATGAATATCACATTGAAGTAGTAGGGATTGTTGATACAACATATAAGTTTCATGCGATGGCAGATTTCCAGTATCTTCCCTTTAAAAAGACGGAATCAGGGTATGAAAACATATCCCATCAGTTTCACCTTCATCAGAATGTTGAGCGTAATGAGTACCTTGCAAGGGAGTCAACGTTGTTTCTACCTCCAGTAATTTTTTCTAGATTTGATATACCTGATAAAGACTACCTCTATAGAGGAGAGGTTTCACACAAACCTGGTTATATCAATCCTGATCAAAGTCGTCCAACACACTTAATAGGAACAATACGACAAAAGAGAACTGTATTCACAAGATTTATTAACTTCACAGATGATATACCAAATGGGCCATCAGAGGAAGCCAACAGAGAATTACGTAAAAAATTCTTTAAAGCAGCTCAGGAGAATGAACTAAAGAAACTTTTTGAAAAGAGACCCATTTGGTCAAAAGCAGCACTGAATTATCACTTCACTGGTTTCAAAGACAAGCTAAAATTTCTACTGCCACTTGTGGCCTTTTATTATACGAATGGACCATGGCGATGTCTGTGGACAAAGTATGGATATGACCCACGTAAACACCCAGAAGCTAAGATGTATCAAACTATAGACTATAGGAAAAGACAAGACAGACTTCCACCATGTAGACAGATGTTCTACCAAATCTGTGATATAGACGTTGAGGAAGTTCAAGATTTGATCAAGAAAGGCAAGTCCAAGAATTGTGATGAGAAAGATGGATGGTGTCCCAGGGGAACGATTGAAAAATGTAGAGACTTAATGACAGAGCACACGGAAAGGCTCTTGAACATATCAAGCTCAAACCTAGAACCTGGAGAATATGCTAAAAACATGAGATTAAGAAGAATTAAAAAGAAGAAGAAGAGGAAAATTAGTCCGGAGAGTTCTGAGGAAGAACTGGATGAGGAATTGGAAGAAATGGAGGAAGAGGATGAAAGGGAGACAACTCTAGATGAAAGGGAGACAACTGTGGATGAACAGGAAGTAACAGATATAAATACAGACTCTATTCTGGGAGAATATGTGACTATAGAAAGTATGATAGAGGAAGACATGAACTTCATGGAAACTGAGATGTTAGACTGTGTCTGATTGGCTGATTCGATAATCAGAAATAACAAAGCCACTTATTGATTGGAGTATGATAGAGGAACACATGAGCTTCACGGAAGCTGAGATGTTAGACTGTGTCTGATTGGCTGGTACAATAATGAAAAATGACAAAGCCTGTTATTGATTGGCTAGTACAAATCCACTTACCAATATTTGGGTATGATATTGATTCAAGAGGTGCTATAATGTAGAAGACATAGTACATATATCGTTCATAGGGCAGCAATCACTATAGGATCTTTGTTTTTTCAGATAAAGGGCAATCCTTTTTAGTGTACTGTAATGTGCTCCAGTCTATTGCAAAACAGAAGGCTTTATTGGAAAACAAAACTGATTTTCAATGCAACAATTTATGCACTGTATCCTGCAGTCCTCATGATAAGCACTGGTCCTCTGGCCTAAGACCAGTAAAACTTTGTTCGGACCAGTATAGTTTTTATTTAGAACTAGATAAAAATAAATTCAAGAATTTGATCTGGACCAGTCTATTCAAATTTTCATTTCAAGGACTATATTGTATAGCCCTTTACAAAAATTCAAGCAAGTAAAAGCAAATGTATTTAGAATTTATAGGATTCCATCATCAATTTTTTTTTGTATTTTGGTGTTCGAGGATTGGCTGGTATATCACTGGTTACACTGTCTGCCATTTCTGTTCATCATCTGTAAATTTCAATAAAGATAAATATAATGTAAACAAATACCTGTCAACCTTTGATGTTTTTTACTTATTTTTTGCTTGTTGAAATTTAAGGTCTACTGGACAATTTCTAATCGACTGTTTTAAAATGATTAATAAAAAATGTATGGTGACA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09734	Tau95	RNA polymerase III transcription factor (TF)IIIC subunit HTH domain	Family	Interproscan
PF17682	Tau95_N	Tau95 Triple barrel domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019136	Domain	Transcription factor IIIC subunit 5, HTH domain	Interproscan
IPR040454	Family	Transcription factor IIIC subunit Tfc1/Sfc1	Interproscan
IPR041499	Domain	Transcription factor IIIC subunit Tfc1/Sfc1, triple barrel domain	Interproscan
IPR042536	Homologous_superfamily	TFIIIC, subcomplex tauA subunit Sfc1, triple barrel domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13230	GENERAL TRANSCRIPTION FACTOR IIIC, POLYPEPTIDE 5	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000127	Cellular Component	transcription factor TFIIIC complex	Interproscan
GO:0001002	Molecular Function	RNA polymerase III type 1 promoter sequence-specific DNA binding	Interproscan
GO:0001003	Molecular Function	RNA polymerase III type 2 promoter sequence-specific DNA binding	Interproscan
GO:0006384	Biological Process	transcription initiation at RNA polymerase III promoter	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15202	GTF3C5, TFC1; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1)	-	Transcription machinery	ko03021	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_57259-3.19 global RNA-seq network